Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C15
         (184 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AL117199-3|CAB55043.3|  868|Caenorhabditis elegans Hypothetical ...    25   9.4  

>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
            T28C6.9 protein.
          Length = 1861

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +2

Query: 119  QQVIHLIENEFKRMLQVQQD 178
            +++IH++EN   +M Q+QQD
Sbjct: 1369 KELIHVVENLKSQMGQIQQD 1388


>AL117199-3|CAB55043.3|  868|Caenorhabditis elegans Hypothetical
           protein Y43F11A.5 protein.
          Length = 868

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 19  WTSCKRSVINYILFVNFTKYLIVERS 96
           WTS + S +NY LF N     + E+S
Sbjct: 513 WTSSRLSRVNYELFENELFAFLAEKS 538


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,680,922
Number of Sequences: 27780
Number of extensions: 50158
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 12,740,198
effective HSP length: 41
effective length of database: 11,601,218
effective search space used: 220423142
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)