Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C14
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.05 |sui1|psu1|translation initiation factor eIF1|Schizo...    66   1e-12
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce...    25   2.0  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    25   2.7  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    25   3.6  
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    25   3.6  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    24   4.7  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    24   4.7  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    24   6.3  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    23   8.3  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    23   8.3  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    23   8.3  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       23   8.3  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    23   8.3  

>SPBC23G7.05 |sui1|psu1|translation initiation factor
           eIF1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 66.1 bits (154), Expect = 1e-12
 Identities = 33/55 (60%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
 Frame = +1

Query: 154 SIQNLNTFDPFADAIKSSEDDVQD-GLVHVRIQQRNGRKRLTTVQGLSSEYDLKK 315
           +IQN NT DPFAD   + +DD Q    +H+RIQQRNGRK LTTVQGL  E+D K+
Sbjct: 3   AIQNFNTVDPFAD---TGDDDAQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKR 54


>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 190

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 232 VHVRIQQRNGRKRLTTVQGLSS 297
           V ++  +R  RKR+TTVQGL +
Sbjct: 99  VLIKTIERTKRKRVTTVQGLDA 120


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 168 EHIRPIRRCYQKLGGRRARWSSARPNPAA 254
           +HIRP   C+   G +  RW+S + N ++
Sbjct: 27  KHIRP--SCFSSFGLQAKRWNSTQQNDSS 53


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 195 SIGEWVECVQILDGHTIERRCSLF 124
           SI EWVE  Q LD     R CS++
Sbjct: 102 SIREWVEIPQHLDYSFSVRLCSIY 125


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 97  SALYRSVSLKQRASTFNRMSIQNLNTFDPF 186
           +++Y S+    ++ST+N   I + NT+  F
Sbjct: 533 NSVYGSIKKDAQSSTYNATDIMSSNTYQEF 562


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 153  VHPESEHIRPIRRCYQKL 206
            +HP    +  +RRC+Q+L
Sbjct: 1969 IHPLKRKVAQVRRCFQEL 1986


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 213 VLRAFDSIGEWVECVQILDGHTIERRCSLFQ 121
           +LR   S+  W+  ++  +G T+E+R  LF+
Sbjct: 25  LLRDPYSLKSWLRYIKTHEGSTLEKRVLLFE 55


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -3

Query: 302  YSEDKPCTVVNLLRPFRCW 246
            ++++   +V NL++ FRCW
Sbjct: 1091 FADENTQSVSNLMKIFRCW 1109


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = -2

Query: 222 LHVVLRAFDSIGEWVECVQILDGHTIERRCSLFQ*NAAIQRTS 94
           +++V  +FDS+G  ++ +     H+ +  C +    A +Q  S
Sbjct: 171 MNLVTSSFDSLGMCLDTILCRLNHSCDPNCQIIFDGAIVQLVS 213


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 169 NTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRK 267
           N F+ FAD     E++ +D    VR  +++ +K
Sbjct: 87  NAFEAFADEQSVEEEEEEDSEKPVRKNKKSSKK 119


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 219 HVVLRAFDSIGEWVECVQILDGHTIERRCS 130
           H+ L+  D       C QI   H + RRCS
Sbjct: 10  HLKLKPADVENYQKICTQIFSCHFVPRRCS 39


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 150 YVHPESEHIRPIRRCYQKLGGR-RARWSSARPNPAAE 257
           Y   + +H R  RR   +  GR R+R  S RP+P+AE
Sbjct: 189 YDDDDRDH-RSRRRSRSRRPGRSRSRRRSRRPSPSAE 224


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 316 SSSSHIPRTSPAPWSIFYARSAAGFGRALDHLARR 212
           SSS HI +T P    I Y +    F     +L RR
Sbjct: 343 SSSMHISKTGPTHSFIIYIQMQLCFDDLESYLIRR 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,377,317
Number of Sequences: 5004
Number of extensions: 25450
Number of successful extensions: 83
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)