Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_C14
(316 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0992 - 33644712-33644726,33644769-33644822,33644915-336451... 57 3e-09
07_03_0685 - 20679883-20679927,20680034-20680087,20680179-206803... 54 2e-08
05_05_0359 + 24393254-24393260,24393952-24394163,24394243-243942... 51 2e-07
04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949... 47 3e-06
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 29 0.77
03_02_0861 - 11873026-11874009,11874140-11874180,11876050-11876314 27 2.3
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 27 3.1
09_04_0163 - 15249816-15249920,15250032-15250163,15250463-152506... 27 4.1
09_02_0107 + 4354470-4354589,4355058-4355156,4355292-4355596,435... 27 4.1
06_03_0497 + 21424732-21424899,21424992-21425057,21425176-214256... 27 4.1
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 27 4.1
05_07_0327 - 29275916-29276017,29276101-29276283,29276392-292764... 26 5.4
04_04_1122 + 31052497-31052629,31053133-31053191,31053285-310535... 26 5.4
01_01_0339 + 2720647-2720790,2721241-2721282,2721580-2721761,272... 26 5.4
11_01_0139 - 1159748-1160173,1160229-1160301,1161600-1161877 26 7.1
02_05_1010 + 33477878-33478446,33478709-33478834,33478905-334791... 26 7.1
07_01_0893 + 7484598-7484744,7484837-7484902,7494387-7494530,749... 25 9.4
03_01_0050 + 430744-431337,432131-432249,432539-433084,433177-43... 25 9.4
01_06_0694 + 31282307-31282312,31282865-31282996,31283428-312834... 25 9.4
>01_06_0992 -
33644712-33644726,33644769-33644822,33644915-33645126,
33645436-33645472
Length = 105
Score = 57.2 bits (132), Expect = 3e-09
Identities = 31/58 (53%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Frame = +1
Query: 151 MSIQNLNTFDPFADAIKSSEDDVQDG---LVHVRIQQRNGRKRLTTVQGLSSEYDLKK 315
+ +Q + FDPFA+A + + V G VHVRIQQRNGRK LTTVQGL EY K
Sbjct: 4 LDVQLPSAFDPFAEA-NAEDSSVGAGSKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNK 60
>07_03_0685 -
20679883-20679927,20680034-20680087,20680179-20680390,
20680476-20680550,20683094-20683168,20686196-20686264,
20686349-20686502,20686577-20686654,20689102-20689194,
20689491-20689640,20690134-20690268,20691009-20691098,
20691412-20691453,20691796-20692053,20692131-20692207,
20693126-20693186,20693687-20693905,20694936-20695208,
20695314-20695505,20695841-20696011
Length = 840
Score = 54.4 bits (125), Expect = 2e-08
Identities = 31/63 (49%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +1
Query: 136 STFNRMSIQNLNTFDPFADAIKSSEDDVQDG---LVHVRIQQRNGRKRLTTVQGLSSEYD 306
S + + IQ FDPFA+A + + G VHVRIQQRNGRK LTTVQGL E+
Sbjct: 724 SFMSDLDIQIPTAFDPFAEA-NAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFS 782
Query: 307 LKK 315
K
Sbjct: 783 YNK 785
>05_05_0359 +
24393254-24393260,24393952-24394163,24394243-24394296,
24394400-24394444
Length = 105
Score = 51.2 bits (117), Expect = 2e-07
Identities = 28/49 (57%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Frame = +1
Query: 178 DPFADAIKSSEDDVQDGL---VHVRIQQRNGRKRLTTVQGLSSEYDLKK 315
DPFA+A + + G VHVRIQQRNGRK LTTVQGL EY K
Sbjct: 3 DPFAEA-NAEDSGAGPGAKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNK 50
>04_04_1237 -
31991817-31992569,31993452-31993550,31994343-31994976,
31995329-31995585
Length = 580
Score = 47.2 bits (107), Expect = 3e-06
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = +1
Query: 232 VHVRIQQRNGRKRLTTVQGLSSEYDLKK 315
VHVR+QQRNGRK LTTVQG+ EY+ K
Sbjct: 498 VHVRVQQRNGRKTLTTVQGIGGEYNYAK 525
>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 29.1 bits (62), Expect = 0.77
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +1
Query: 127 QRASTFNR-MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKRL--TTVQGLSS 297
Q AS +R + LN+ PF D +KS++D ++ L H R + N ++ TT GL++
Sbjct: 961 QTASDIHRYVRCTLLNSTKPFEDVVKSAQDSLR-WLCHKRFLEWNNETKIYSTTPLGLAA 1019
>03_02_0861 - 11873026-11874009,11874140-11874180,11876050-11876314
Length = 429
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 42 HLSAETHRRALSVTVILLKCVVSQRFIETKSIYVQSYVHPESE 170
H+S E+ R S +V LKC + +RF+ KS + + + S+
Sbjct: 242 HISVESQRSPTS-SVRFLKCGLCERFLRQKSPWTSNRIVQNSD 283
>06_03_0742 +
24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 197 IASANGSNVFRFWMDIRLNVDAL 129
IA++N V R WMD++ NV+ L
Sbjct: 440 IAASNHMEVLRRWMDLQRNVNVL 462
>09_04_0163 -
15249816-15249920,15250032-15250163,15250463-15250629,
15251259-15251448,15252530-15252661,15253275-15253382,
15253513-15253608,15253702-15253809,15253917-15254089,
15255026-15255401,15255887-15256030,15256125-15256799,
15256917-15256982,15257082-15257249
Length = 879
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +2
Query: 26 VRVNWSPVSGNTPPRVISDSYIVE--VRCIAAFH*NKEH 136
V+V WS +S + PR + D+Y++ + IA NKE+
Sbjct: 751 VKVTWSSLSKSLSPRGVVDTYVLNAYAKKIANDQNNKEN 789
>09_02_0107 +
4354470-4354589,4355058-4355156,4355292-4355596,
4356101-4356278,4356368-4356481,4356543-4356674,
4356784-4356888
Length = 350
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +2
Query: 26 VRVNWSPVSGNTPPRVISDSYIVE--VRCIAAFH*NKEH 136
V+V WS +S + PR + D+Y++ + IA NKE+
Sbjct: 184 VKVTWSSLSKSLSPRGVVDTYVLNAYAKKIANDQNNKEN 222
>06_03_0497 +
21424732-21424899,21424992-21425057,21425176-21425634,
21425945-21426088,21426172-21426306,21426418-21426808,
21427256-21427428,21427508-21427615,21427715-21427810,
21427896-21428003,21428644-21428792,21428924-21428925,
21429071-21429207,21429538-21429842,21430922-21431099,
21431192-21431305,21431373-21431504,21431610-21431843
Length = 1032
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +2
Query: 26 VRVNWSPVSGNTPPRVISDSYIVE--VRCIAAFH*NKEH 136
V+V WS +S + PR + D+Y++ + IA NKE+
Sbjct: 823 VKVTWSSLSKSLSPRGVVDTYVLNAYAKKIANDQNNKEN 861
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +2
Query: 26 VRVNWSPVSGNTPPRVISDSYIVE--VRCIAAFH*NKEH 136
V+V WS +S + PR + D+Y++ + IA NKE+
Sbjct: 576 VKVTWSSLSKSLSPRGVVDTYVLNAYAKKIANDQNNKEN 614
>05_07_0327 -
29275916-29276017,29276101-29276283,29276392-29276453,
29276590-29276671,29276922-29276987,29277297-29277359,
29277466-29277570,29277678-29277887,29277988-29278103,
29278875-29279082
Length = 398
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -1
Query: 307 SHIPRTSPAPWSIFYARSAAGFGRALDHLARR 212
S +PR PA +Y GF + DH+ ++
Sbjct: 29 SRLPRRPPASCRCYYYGDGGGFRKNYDHIPKQ 60
>04_04_1122 +
31052497-31052629,31053133-31053191,31053285-31053579,
31054099-31054279,31054739-31054956,31055522-31055739,
31055842-31055958,31056106-31056128,31056223-31056438,
31056536-31056677,31056822-31057067,31057659-31057856,
31058331-31058379,31060835-31060911,31061266-31061551,
31061661-31061841,31062149-31062344,31062630-31062738,
31062861-31062961,31063155-31063267,31063347-31063442,
31063531-31063746,31063857-31063995,31064087-31064332,
31064605-31064940
Length = 1396
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 168 EHIRPIRRCYQKLGGRRARWSSARPNPAAE 257
E ++PI RC ++L G R SA P P E
Sbjct: 646 EIMKPIERCRRELLGLVLRRGSAVPGPCKE 675
>01_01_0339 +
2720647-2720790,2721241-2721282,2721580-2721761,
2721828-2721939,2722814-2722867,2723077-2723115,
2723116-2723186,2723313-2723394,2723493-2723589,
2723727-2723797
Length = 297
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 181 PFADAIKSSEDDVQDGLVHVRIQQRNG 261
P A+ KS+ ++V DG+ H RIQ +G
Sbjct: 19 PAANLAKSACENVADGMDHARIQLVSG 45
>11_01_0139 - 1159748-1160173,1160229-1160301,1161600-1161877
Length = 258
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 181 PFADAIKSS-EDDVQDGLVHVRIQQRNGRKRLTTVQGLSSE 300
P A +K++ EDD ++ L+ R ++ +G+KR V+ L E
Sbjct: 131 PAAKKMKTTTEDDHEEVLLAYRSRKEDGKKRKKVVRRLGKE 171
>02_05_1010 +
33477878-33478446,33478709-33478834,33478905-33479190,
33479293-33479484,33479641-33479870,33480379-33480718,
33481673-33481789,33481940-33482014
Length = 644
Score = 25.8 bits (54), Expect = 7.1
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = +2
Query: 50 SGNTPPRVISDSYIVEVRCIAAFH*NKEHLRSIVCPSRI*THSTHSPMLSKARRTTCKMV 229
+G R +S V C+A + N E LR + C TH H + K +
Sbjct: 314 AGTDKERSLSAEDAVCCICLAKYAHNDE-LRELPC-----THCFHKECVDKWLKINALCP 367
Query: 230 *CTSESSSGTGVKD 271
C SE +S +G D
Sbjct: 368 LCKSEIASSSGTSD 381
>07_01_0893 +
7484598-7484744,7484837-7484902,7494387-7494530,
7494860-7495235,7495904-7496017,7496282-7496454,
7496562-7496669,7497311-7497377,7497791-7497904,
7498121-7498257,7498727-7498813,7498962-7498986,
7499044-7499266,7499770-7499947,7500039-7500152,
7500249-7500380,7500488-7500588,7500720-7500933
Length = 839
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 26 VRVNWSPVSGNTPPRVISDSYIVE--VRCIAAFH*NKEH 136
V+V WS +S PR + D+Y++ + IA NKE+
Sbjct: 603 VKVTWSSLSKYLSPRGVVDTYVLNAYAKKIANDQNNKEN 641
>03_01_0050 +
430744-431337,432131-432249,432539-433084,433177-433483,
433605-433773,433861-433960,435805-436103,436796-436869,
437007-437442,437622-437650
Length = 890
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 117 FIETKSIYVQSYVHPESEHIRPIRRCYQKLG 209
F E+ +QSYV + EH P+ YQ+ G
Sbjct: 431 FRESLDQLIQSYVRRQEEHDDPLDWDYQRQG 461
>01_06_0694 +
31282307-31282312,31282865-31282996,31283428-31283496,
31283853-31283917,31284025-31284123,31284308-31284407,
31285228-31285290
Length = 177
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2
Query: 26 VRVNWSPVSGN 58
VRVNWSPVS N
Sbjct: 128 VRVNWSPVSKN 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,487,831
Number of Sequences: 37544
Number of extensions: 185779
Number of successful extensions: 468
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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