Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_C13
(358 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 76 1e-15
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 76 1e-15
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 28 0.49
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 27 0.65
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 26 1.5
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 3.5
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 25 4.6
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 24 6.1
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p... 24 6.1
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 21 7.4
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos... 24 8.0
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 24 8.0
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 24 8.0
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 76.2 bits (179), Expect = 1e-15
Identities = 35/50 (70%), Positives = 40/50 (80%)
Frame = +2
Query: 74 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMWKSRPCKIVEMSTSKT 223
M + E FE G++GAS TFPMQCSALRKNG V+ K RPCKIV+MSTSKT
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKT 50
Score = 60.9 bits (141), Expect = 6e-11
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = +3
Query: 189 PARLSRCPLPKRGKHGHAKVHLVGIDICNGKKYEDICPSTQNM 317
P ++ K GKHGHAKVH+V +DI NG+KYED+ PST NM
Sbjct: 39 PCKIVDMSTSKTGKHGHAKVHIVALDIFNGRKYEDMSPSTHNM 81
Score = 25.0 bits (52), Expect = 3.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 280 RNMKIFAPPPRTWDVPHVKRKDYQL 354
R + +P DVP VKR +YQL
Sbjct: 69 RKYEDMSPSTHNMDVPVVKRDEYQL 93
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 76.2 bits (179), Expect = 1e-15
Identities = 35/50 (70%), Positives = 40/50 (80%)
Frame = +2
Query: 74 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMWKSRPCKIVEMSTSKT 223
M + E FE G++GAS TFPMQCSALRKNG V+ K RPCKIV+MSTSKT
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKT 50
Score = 60.9 bits (141), Expect = 6e-11
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = +3
Query: 189 PARLSRCPLPKRGKHGHAKVHLVGIDICNGKKYEDICPSTQNM 317
P ++ K GKHGHAKVH+V +DI NG+KYED+ PST NM
Sbjct: 39 PCKIVDMSTSKTGKHGHAKVHIVALDIFNGRKYEDMSPSTHNM 81
Score = 25.0 bits (52), Expect = 3.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 280 RNMKIFAPPPRTWDVPHVKRKDYQL 354
R + +P DVP VKR +YQL
Sbjct: 69 RKYEDMSPSTHNMDVPVVKRDEYQL 93
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 27.9 bits (59), Expect = 0.49
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 181 ESPLQDCRDVHFQNVANTVTLRFTWS 258
ES + D D++FQN A+ + RFT++
Sbjct: 104 ESEVFDLEDINFQNDADDINQRFTYN 129
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 27.5 bits (58), Expect = 0.65
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 281 LAIAYINADQVNLSVTVFATFWKWTSRQSCR 189
L I I A +++ ++ A FW+W+ R++ R
Sbjct: 30 LRIMVIIASAISIVFSLIAIFWRWSRRRTIR 60
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 26.2 bits (55), Expect = 1.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 209 TSRQSCRGDSSTLRNRSYAGRSTAWEML 126
T+ ++C+GD +T R G WEM+
Sbjct: 320 TNCRNCKGDINTFRPTIMVGVPAVWEMV 347
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 3.5
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 151 PA*ERFRNVEESPLQDCRDVHFQNVANTVTLRFTWSALI 267
P ERF ++ E ++ F ++A+T RF W +
Sbjct: 524 PLHERFIDIFEQTFSSKKNAKFISMASTSARRFRWKTCL 562
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 4.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -3
Query: 158 YAGRSTAWEMLPRHRSLRSRNVYLQ 84
+A WE P+H +RS N Y++
Sbjct: 94 FADLRELWEYEPKHDKIRSWNTYVR 118
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 24.2 bits (50), Expect = 6.1
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +3
Query: 228 KHGHAKVHLVGIDICNGKKY 287
+H H++G+D+ NG Y
Sbjct: 67 EHAMEHTHMIGVDVKNGHTY 86
>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 24.2 bits (50), Expect = 6.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 140 QCSALRKNGFVMWKSRPCKIVEMSTSKTWQTRSR 241
QC L NG + +S CK MS+ + RS+
Sbjct: 202 QCGVLLPNGQMCARSLTCKTHSMSSKRAVPGRSQ 235
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 21.0 bits (42), Expect(2) = 7.4
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -2
Query: 237 DRVCHVLEVDISTILQGRLFHITKP 163
DR+CH L + I ++ + F P
Sbjct: 545 DRLCHFLIITIGLVMFCKCFSEMSP 569
Score = 21.0 bits (42), Expect(2) = 7.4
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2
Query: 99 KCVSSMSPIVLC 64
KC S MSP+ C
Sbjct: 562 KCFSEMSPLFAC 573
>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 196
Score = 23.8 bits (49), Expect = 8.0
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -3
Query: 215 KWTSRQSCRGDSSTLRNRSYAGRSTAWEMLPRHRSLRSRNVYLQ 84
KW +S R D S R R+ TA E + R+R R L+
Sbjct: 16 KWIIPESRRKDGSVRRERAVKPGYTAPEDIKRYRPGRGNFASLE 59
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 23.8 bits (49), Expect = 8.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 256 TK*TLA*PCLPRFGSGHLDNL 194
T TL C+P++ GH DNL
Sbjct: 421 TNATLQQNCIPQYRVGHQDNL 441
>SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 886
Score = 23.8 bits (49), Expect = 8.0
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Frame = -2
Query: 210 DISTILQGRLFHITKPFLRRAEHCMGNVAEAPESPVSKCVSS----------MSPIVLCV 61
D++ +L H T+ L M +A P +P+S + S MSP +
Sbjct: 804 DLTILLSSSARHYTESSLATPVPLMSPIARVPATPLSAALGSAAQSITSPLIMSPAAIPA 863
Query: 60 LSFNYGKE*YVTD 22
+++ K Y TD
Sbjct: 864 SAYSTNKIDYFTD 876
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,741,203
Number of Sequences: 5004
Number of extensions: 36744
Number of successful extensions: 97
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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