Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_C13
(358 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 68 2e-12
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 61 2e-10
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 54 2e-08
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 54 3e-08
12_01_0857 - 8043765-8043839,8044215-8044497,8044578-8044748,804... 30 0.47
04_01_0123 - 1283197-1283292,1283330-1284439,1284790-1285177,128... 29 1.1
04_04_1324 + 32659752-32661972,32662067-32662761 29 1.4
02_04_0638 - 24654003-24654119,24655231-24655392 29 1.4
08_02_0483 + 17656376-17656806,17657246-17657423,17657556-176577... 28 1.9
12_02_1233 + 27224219-27225607 28 2.5
07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822... 28 2.5
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 28 2.5
04_02_0016 + 8557023-8557176,8557277-8557908 27 3.3
12_02_0653 + 21545862-21546584,21546661-21546696,21547182-215474... 27 4.3
01_05_0270 - 20271859-20272866,20273043-20273058,20273455-202737... 27 4.3
11_05_0087 + 18970741-18972702 27 5.7
09_03_0051 + 11902322-11903125 27 5.7
01_01_1134 + 8994315-8995892 27 5.7
09_02_0595 - 11051728-11051955,11052032-11052127,11052134-11052739 26 7.6
04_01_0371 - 4888771-4890048 26 7.6
01_06_1365 - 36690267-36692222 26 7.6
01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999 26 7.6
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 68.1 bits (159), Expect = 2e-12
Identities = 29/51 (56%), Positives = 40/51 (78%), Gaps = 1/51 (1%)
Frame = +2
Query: 74 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMWKSRPCKIVEMSTSKT 223
M D E+ HFE+ D+GAS T+P Q +RKNG+++ K+RPCK+VE+STSKT
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKT 51
Score = 57.2 bits (132), Expect = 4e-09
Identities = 25/42 (59%), Positives = 28/42 (66%)
Frame = +3
Query: 189 PARLSRCPLPKRGKHGHAKVHLVGIDICNGKKYEDICPSTQN 314
P ++ K GKHGHAK H VGIDI NGKK EDI PS+ N
Sbjct: 40 PCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN 81
Score = 27.9 bits (59), Expect = 2.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 280 RNMKIFAPPPRTWDVPHVKRKDYQL 354
+ ++ P DVPHV R DYQL
Sbjct: 70 KKLEDIVPSSHNCDVPHVDRTDYQL 94
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 61.3 bits (142), Expect = 2e-10
Identities = 29/55 (52%), Positives = 40/55 (72%), Gaps = 5/55 (9%)
Frame = +2
Query: 74 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMWKSRPC----KIVEMSTSKT 223
M D E+ HFE+ D+GAS T+P Q +RKNG+++ K+RPC K+VE+STSKT
Sbjct: 14 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKGFGKVVEVSTSKT 68
Score = 53.2 bits (122), Expect = 6e-08
Identities = 23/32 (71%), Positives = 24/32 (75%)
Frame = +3
Query: 219 KRGKHGHAKVHLVGIDICNGKKYEDICPSTQN 314
K GKHGHAK H V IDI NGKK EDI PS+ N
Sbjct: 67 KTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHN 98
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 280 RNMKIFAPPPRTWDVPHVKRKDYQL 354
+ ++ P DVPHV R +YQL
Sbjct: 87 KKLEDIVPSSHNCDVPHVNRTEYQL 111
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 53.6 bits (123), Expect(2) = 2e-08
Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = +2
Query: 74 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMWKSRPCK 196
M D E+ HFE+ D+GAS T+P Q +RKNG+++ K+RPCK
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCK 42
Score = 48.4 bits (110), Expect = 2e-06
Identities = 21/32 (65%), Positives = 22/32 (68%)
Frame = +3
Query: 219 KRGKHGHAKVHLVGIDICNGKKYEDICPSTQN 314
K GKHGHAK H V IDI KK EDI PS+ N
Sbjct: 82 KTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHN 113
Score = 28.3 bits (60), Expect = 1.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 277 ARNMKIFAPPPRTWDVPHVKRKDYQL 354
A+ ++ P DVPHV R +YQL
Sbjct: 101 AKKLEDIVPSSHNCDVPHVNRTEYQL 126
Score = 20.6 bits (41), Expect(2) = 2e-08
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +2
Query: 194 KIVEMSTSKT 223
K+VE+STSKT
Sbjct: 74 KVVEVSTSKT 83
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 54.0 bits (124), Expect = 3e-08
Identities = 26/62 (41%), Positives = 32/62 (51%)
Frame = +3
Query: 129 HFPCSAPPCVRTVS*CGRVAPARLSRCPLPKRGKHGHAKVHLVGIDICNGKKYEDICPST 308
H PC + + + ++ K GKHGHAK H V IDI NGKK EDI PS+
Sbjct: 1355 HIVIKNRPCKWSGNHASLLVDTKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSS 1414
Query: 309 QN 314
N
Sbjct: 1415 HN 1416
Score = 52.4 bits (120), Expect = 1e-07
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 14/64 (21%)
Frame = +2
Query: 74 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMWKSRPC-------------KIVEMS 211
M D E+ HFE+ D+GAS T+P Q +RKNG ++ K+RPC K+VE+S
Sbjct: 1323 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKWSGNHASLLVDTKVVEVS 1382
Query: 212 TSKT 223
TSKT
Sbjct: 1383 TSKT 1386
Score = 28.3 bits (60), Expect = 1.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 280 RNMKIFAPPPRTWDVPHVKRKDYQL 354
+ ++ P DVPHV R DYQL
Sbjct: 1405 KKLEDIVPSSHNCDVPHVNRTDYQL 1429
>12_01_0857 -
8043765-8043839,8044215-8044497,8044578-8044748,
8044826-8045670,8045828-8046262,8046339-8046563,
8046700-8046781,8046814-8047067
Length = 789
Score = 30.3 bits (65), Expect = 0.47
Identities = 13/57 (22%), Positives = 25/57 (43%)
Frame = +2
Query: 71 TMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMWKSRPCKIVEMSTSKTWQTRSR 241
T+ +++D + T + A FP C L + F + K + + + W+ R R
Sbjct: 33 TITEVDDVGYPTAPTKAVKKFPTICGVLGRRNFTILKDHIDLVPQEEKEEAWRGRGR 89
>04_01_0123 -
1283197-1283292,1283330-1284439,1284790-1285177,
1285523-1287609
Length = 1226
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +3
Query: 180 RVAPARLSRCPLPKRGKH--GHAKVHLVGIDICNGKKYEDICPSTQNMGRSP 329
R++P R+ CP+ K H KV L I + K Y I + + G +P
Sbjct: 97 RISPTRVVYCPIHKTKNHDLSSCKVFLSAIKALSPKSYVPIRDNGKEQGATP 148
>04_04_1324 + 32659752-32661972,32662067-32662761
Length = 971
Score = 28.7 bits (61), Expect = 1.4
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +2
Query: 32 YHSLP*LKLSTHNTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMWKSRPCKIVEMS 211
Y + P +L T + +G IED E + FP SA ++ +P K+V
Sbjct: 606 YRATPHHRLLTTDVVGTIEDIEHERHNQPKPGEFPSWVSAHQRRLLQAGTQKPDKVVAKD 665
Query: 212 TSKTWQT 232
S ++T
Sbjct: 666 GSGDFKT 672
>02_04_0638 - 24654003-24654119,24655231-24655392
Length = 92
Score = 28.7 bits (61), Expect = 1.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +3
Query: 204 RCPLPKRGKHGHAKVHLVGIDICNGK 281
R L + G HGH +H++ +C K
Sbjct: 66 RAKLHEEGCHGHVNIHIIACGVCGHK 91
>08_02_0483 +
17656376-17656806,17657246-17657423,17657556-17657717,
17658723-17659280
Length = 442
Score = 28.3 bits (60), Expect = 1.9
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -3
Query: 203 RQSCRGDSSTLRNRSYAGRSTAWEMLPRHRSLRS 102
RQ+CR D T RN + AGR T E L R + S
Sbjct: 393 RQACRVDVETGRNVADAGRGTNEEELARFARMLS 426
>12_02_1233 + 27224219-27225607
Length = 462
Score = 27.9 bits (59), Expect = 2.5
Identities = 11/52 (21%), Positives = 21/52 (40%)
Frame = -3
Query: 218 WKWTSRQSCRGDSSTLRNRSYAGRSTAWEMLPRHRSLRSRNVYLQCHPLCCV 63
W+W R R ++T+ S+ WE + ++Y+ C C +
Sbjct: 191 WRWEERSFVREGNATMGTIDEVCSSSGWEPFDTYSVYFRGSLYVHCQNNCVI 242
>07_03_0918 - 22581625-22581687,22581773-22581868,22581980-22582268,
22582341-22582477,22582567-22582683,22583277-22583440,
22583542-22583756,22583838-22584004,22584206-22584559,
22584647-22584795,22584907-22585030,22585132-22585371,
22585723-22586140,22586297-22586920,22586999-22587183,
22587302-22587412,22587583-22587789,22587869-22587967,
22588063-22588159,22588296-22588384,22588495-22588548,
22588671-22588793,22588872-22588940,22589020-22589089,
22589202-22589260,22589367-22589570,22590032-22590060,
22590375-22590433,22590513-22590634,22591637-22591830,
22591974-22592088
Length = 1680
Score = 27.9 bits (59), Expect = 2.5
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = -2
Query: 294 YLHISCHCIYQCRPSEP*RDRVCHVLEVD----ISTILQGRLFHITKPFLRRAEHCMGNV 127
YL I + ++P D HV+E D + ++ +G+L L+ A +
Sbjct: 1548 YLEILQKSTVEHDGNDPSEDTNGHVIESDEHEKLKSLAEGKLVSFCGQILKDASDLQPST 1607
Query: 126 AEAPESPVSKCVSSMSPIVLCVLS 55
EA + + + + +P+++ VL+
Sbjct: 1608 GEAASADIHRVLDLRAPVIVKVLN 1631
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +3
Query: 114 PVPRQHFPCSAPPCVRTVS*CGRVAPARLSRCPLPK 221
P+P+ PC PPC + C + P C PK
Sbjct: 81 PLPQPPPPCKPPPCEKPPEDC-KPKPCHCCSCEKPK 115
>04_02_0016 + 8557023-8557176,8557277-8557908
Length = 261
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 120 PRQHFPCSAPPCVRTVS*CGRVAPARLSRCPLPKRG 227
PRQHF + P ++ G + P R P K+G
Sbjct: 131 PRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQG 166
>12_02_0653 +
21545862-21546584,21546661-21546696,21547182-21547401,
21547590-21548025,21548103-21548273,21548354-21548636,
21548716-21548829,21549012-21549082,21549417-21549429
Length = 688
Score = 27.1 bits (57), Expect = 4.3
Identities = 11/53 (20%), Positives = 23/53 (43%)
Frame = +2
Query: 71 TMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMWKSRPCKIVEMSTSKTWQ 229
T+ +++D + T + A FP C L + F + K + + + W+
Sbjct: 33 TITEVDDVGYPTAPTKAVKKFPTICGVLGRRNFTILKDHIDLVPQEEKEEAWR 85
>01_05_0270 -
20271859-20272866,20273043-20273058,20273455-20273756,
20273932-20274231
Length = 541
Score = 27.1 bits (57), Expect = 4.3
Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Frame = -1
Query: 226 PRFGSGHLD---NLAGAT-LPH---YETVLTQGGALHGKCCRGTGVSGL 101
PR G LD NL GA PH YE L GG G RG+G+ L
Sbjct: 39 PRAGLDGLDLNFNLQGAEEFPHIGEYENYLQSGGDQGGSTTRGSGLPTL 87
>11_05_0087 + 18970741-18972702
Length = 653
Score = 26.6 bits (56), Expect = 5.7
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +3
Query: 78 VTLKIHISRPETPVPRQHFPCSAPPCVRTVS*CGRVAPA-RLSRCPL-PKRGKHGHAKVH 251
VT++ + VP C PC R V G+ P + R P P G+HGH + H
Sbjct: 15 VTVEFDEVDGDVDVPGLPRLCRQRPC-RAVPDGGQEEPQLHVVRAPRRPLHGRHGHHREH 73
Query: 252 LVGID 266
G D
Sbjct: 74 RRGAD 78
>09_03_0051 + 11902322-11903125
Length = 267
Score = 26.6 bits (56), Expect = 5.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 99 SRPETPVPRQHFPCSAPP 152
+ P TP PR+ P +APP
Sbjct: 87 AEPRTPTPRKRSPVAAPP 104
>01_01_1134 + 8994315-8995892
Length = 525
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 308 GGGANIFIFLAIAYINADQV 249
GGGA + IF A Y NAD V
Sbjct: 37 GGGAELDIFSAERYFNADDV 56
>09_02_0595 - 11051728-11051955,11052032-11052127,11052134-11052739
Length = 309
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/53 (20%), Positives = 23/53 (43%)
Frame = +2
Query: 71 TMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMWKSRPCKIVEMSTSKTWQ 229
T+ +++D + T + A FP C L + F + K + + + W+
Sbjct: 26 TITEMDDVGYPTAPTKAVKKFPTICGVLGRRNFTILKDHIDLVPQEEKEEAWR 78
>04_01_0371 - 4888771-4890048
Length = 425
Score = 26.2 bits (55), Expect = 7.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 185 RPCKIVEMSTSKTWQTRSR 241
RPC + E T+ WQ R+R
Sbjct: 242 RPCSVFEAVTAAMWQCRTR 260
>01_06_1365 - 36690267-36692222
Length = 651
Score = 26.2 bits (55), Expect = 7.6
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +1
Query: 148 RPA*ERFRNVEESPLQDCRDVHFQNVANTVTLRFTWSALIYAMARNMKIFAPPPRTWDVP 327
+PA N +ESPL HF + + + F+ ++LI ++ +++ P + P
Sbjct: 431 KPAPTTIANGKESPLGGSEFYHFHHAEDLLDRGFSSNSLIEDISASLEAALSGPGSAKKP 490
Query: 328 HVKRKDYQL 354
RK + L
Sbjct: 491 RRWRKAWSL 499
>01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999
Length = 764
Score = 26.2 bits (55), Expect = 7.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 131 FPMQCSALRKNGFVMWKSRPCKIVEMSTSKTWQT 232
FP +A+ G VM K RPC++ + S W+T
Sbjct: 729 FP-SIAAMAMMGRVMNKLRPCELQKRGPSVVWRT 761
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,178,984
Number of Sequences: 37544
Number of extensions: 284500
Number of successful extensions: 884
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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