Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C12
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...    55   3e-09
SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...    54   6e-09
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    26   1.8  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    24   7.2  
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    24   9.6  

>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 55.2 bits (127), Expect = 3e-09
 Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
 Frame = +2

Query: 155 PRHG-RLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAEKRTP 331
           P  G RLY KA    ++R     H  T+L+KIEG   + +A FY GKR  +VY++ K  P
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNK--P 59

Query: 332 IPGGPRGKKTKLRAIWG 382
           + G      +K+R IWG
Sbjct: 60  VRG------SKIRVIWG 70


>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
           L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 54.4 bits (125), Expect = 6e-09
 Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
 Frame = +2

Query: 155 PRHG-RLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAEKRTP 331
           P  G RLY KA    ++R     H  T+++KIEG   + +A FY GKR  YVY++ K   
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAV- 60

Query: 332 IPGGPRGKKTKLRAIWG 382
                RG  +K+R IWG
Sbjct: 61  -----RG--SKIRVIWG 70


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 162 MAGSTPKLYSQVINVVCATNMKIQLC*RLRVQRIAV 269
           +AG+ P ++  +IN +C  +M ++    L + +IAV
Sbjct: 377 VAGNLPNIFPIIINGLCDNDMDVRQAALLALSQIAV 412


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 8/13 (61%), Positives = 13/13 (100%)
 Frame = -3

Query: 261 SFVPSIFNKAVFS 223
           +F+PS+F+K+VFS
Sbjct: 412 NFIPSLFSKSVFS 424


>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +2

Query: 221 HENTALLKIEGTKDRSDALFYAGKRCVYVYRAEKRTPIPGGPR 349
           HE+   L+    +  S+   YA +    +    +R PIP  PR
Sbjct: 228 HESLPALQNPPIQSHSETDLYADEELDSILMHHERPPIPESPR 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,379,503
Number of Sequences: 5004
Number of extensions: 24559
Number of successful extensions: 52
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)