Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C12
         (386 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451     66   1e-11
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756...    65   2e-11
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009     65   2e-11
03_05_1062 - 30043596-30043811,30044083-30044178,30044387-300444...    31   0.42 
04_04_0754 + 27803143-27803517,27805441-27806832,27806910-278071...    26   9.1  

>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
          Length = 112

 Score = 65.7 bits (153), Expect = 1e-11
 Identities = 32/73 (43%), Positives = 44/73 (60%)
 Frame = +2

Query: 167 RLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAEKRTPIPGGP 346
           RLY +    GYKR   NQ+ENT+L++IEG   + +  +Y GKR  YVY+A+ ++   GG 
Sbjct: 11  RLYVRGTILGYKRSKSNQYENTSLVQIEGVNTKEEVAWYCGKRMAYVYKAKTKS---GG- 66

Query: 347 RGKKTKLRAIWGK 385
               T  R IWGK
Sbjct: 67  ----TNYRCIWGK 75


>05_07_0069 +
           27475072-27475136,27475237-27475465,27475532-27475630,
           27476172-27476287,27476670-27476757
          Length = 198

 Score = 64.9 bits (151), Expect = 2e-11
 Identities = 31/73 (42%), Positives = 44/73 (60%)
 Frame = +2

Query: 167 RLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAEKRTPIPGGP 346
           RLY +    GYKR   NQ+ENT+LL+IEG   + +  +YAGKR  YVY+A+ ++      
Sbjct: 10  RLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKS------ 63

Query: 347 RGKKTKLRAIWGK 385
               + +R IWGK
Sbjct: 64  --NDSTIRCIWGK 74


>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
          Length = 111

 Score = 64.9 bits (151), Expect = 2e-11
 Identities = 31/73 (42%), Positives = 44/73 (60%)
 Frame = +2

Query: 167 RLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAEKRTPIPGGP 346
           RLY +    GYKR   NQ+ENT+LL+IEG   + +  +YAGKR  YVY+A+ ++      
Sbjct: 10  RLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKS------ 63

Query: 347 RGKKTKLRAIWGK 385
               + +R IWGK
Sbjct: 64  --NDSTIRCIWGK 74


>03_05_1062 -
           30043596-30043811,30044083-30044178,30044387-30044448,
           30044990-30045023,30045220-30046173
          Length = 453

 Score = 30.7 bits (66), Expect = 0.42
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 287 QHRKVHHCDPLYPQSLTKLYFHVGCA 210
           Q R+VH CDP+YP  L    F  G A
Sbjct: 129 QLRRVHACDPIYPADLPDRRFAYGLA 154


>04_04_0754 +
           27803143-27803517,27805441-27806832,27806910-27807164,
           27807246-27807368,27807643-27808119,27808217-27808603
          Length = 1002

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 255 QRIAVMHFSMLASVACMSTVQRKGRRSPGVHVA 353
           +++AV   S +   AC  +V++  +R  G+H A
Sbjct: 74  EKVAVFEVSGMTCAACAGSVEKAVKRLQGIHDA 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,773,381
Number of Sequences: 37544
Number of extensions: 182450
Number of successful extensions: 465
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)