Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C12
         (386 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal prote...    93   6e-20
U39674-7|AAA80417.1|   91|Caenorhabditis elegans Hypothetical pr...    29   0.86 
AF039046-8|AAB94212.1|   72|Caenorhabditis elegans Caenacin (cae...    29   1.1  
Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical pr...    27   3.5  
U58737-5|ABC71794.1| 1294|Caenorhabditis elegans Trehalose 6-pho...    27   3.5  
U58737-4|AAK39395.3| 1331|Caenorhabditis elegans Trehalose 6-pho...    27   3.5  
AJ811573-1|CAH18875.1| 1331|Caenorhabditis elegans putative treh...    27   3.5  
AJ512332-1|CAD54506.1| 1331|Caenorhabditis elegans trehalose-6-p...    27   3.5  
Z81062-6|CAB02949.2|  320|Caenorhabditis elegans Hypothetical pr...    27   4.6  
AL117193-7|CAB60301.2|  346|Caenorhabditis elegans Hypothetical ...    27   4.6  
Z66515-2|CAA91353.1|  543|Caenorhabditis elegans Hypothetical pr...    27   6.1  
S66757-1|AAB28819.1|  581|Caenorhabditis elegans Egl-43 protein.       27   6.1  

>U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 33 protein.
          Length = 124

 Score = 93.1 bits (221), Expect = 6e-20
 Identities = 46/84 (54%), Positives = 58/84 (69%)
 Frame = +2

Query: 134 VRKVSSKPRHGRLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYR 313
           V +  S P  GRLY KA+FTG+KRGLR Q E+T+LLK+EG  ++ DA FYAGKR VY+Y+
Sbjct: 6   VARRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYK 65

Query: 314 AEKRTPIPGGPRGKKTKLRAIWGK 385
           A  +T   G      T+ RAIWGK
Sbjct: 66  AHNKTLKTG--HTVATRTRAIWGK 87


>U39674-7|AAA80417.1|   91|Caenorhabditis elegans Hypothetical
           protein C06E2.2 protein.
          Length = 91

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -1

Query: 248 QSLTKLYFHVGCADHVYNL 192
           ++LTKL+FH+ CAD++  +
Sbjct: 49  ETLTKLFFHLACADNIIKI 67


>AF039046-8|AAB94212.1|   72|Caenorhabditis elegans Caenacin
           (caenorhabditis bacteriocin)protein 2 protein.
          Length = 72

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 238 QSCIFMLVAQTTFITCEYSFGVEPAMTGFRGHFTHHLGWF 119
           +S + +LVA   F T +Y +G  P M G  G +   +G +
Sbjct: 3   RSILILLVALIAFSTAQYGYGGYPGMMGGYGGYPGMMGGY 42


>Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical
           protein T04C10.4 protein.
          Length = 208

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -1

Query: 284 HRKVHHCDPLYPQSLTKLYFHVGCADHVYN 195
           H   HH  P YPQS    Y H     H  N
Sbjct: 30  HHHHHHQSPTYPQSYFNPYSHQSYQQHHLN 59


>U58737-5|ABC71794.1| 1294|Caenorhabditis elegans Trehalose
           6-phosphate synthaseprotein 1, isoform b protein.
          Length = 1294

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 370 TKLSFLATWTPGDRRPFLCTVDIHATLASIEK 275
           TKLS  A    G+ + F  T DIH  L+ +EK
Sbjct: 893 TKLSLEADEESGEEKGFEITYDIHDELSEMEK 924


>U58737-4|AAK39395.3| 1331|Caenorhabditis elegans Trehalose
            6-phosphate synthaseprotein 1, isoform a protein.
          Length = 1331

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 370  TKLSFLATWTPGDRRPFLCTVDIHATLASIEK 275
            TKLS  A    G+ + F  T DIH  L+ +EK
Sbjct: 930  TKLSLEADEESGEEKGFEITYDIHDELSEMEK 961


>AJ811573-1|CAH18875.1| 1331|Caenorhabditis elegans putative trehalose
            6-phosphatesynthase protein.
          Length = 1331

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 370  TKLSFLATWTPGDRRPFLCTVDIHATLASIEK 275
            TKLS  A    G+ + F  T DIH  L+ +EK
Sbjct: 930  TKLSLEADEESGEEKGFEITYDIHDELSEMEK 961


>AJ512332-1|CAD54506.1| 1331|Caenorhabditis elegans
            trehalose-6-phosphate synthase protein.
          Length = 1331

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 370  TKLSFLATWTPGDRRPFLCTVDIHATLASIEK 275
            TKLS  A    G+ + F  T DIH  L+ +EK
Sbjct: 930  TKLSLEADEESGEEKGFEITYDIHDELSEMEK 961


>Z81062-6|CAB02949.2|  320|Caenorhabditis elegans Hypothetical
           protein F15A4.7 protein.
          Length = 320

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 298 ATLASIEKCITAILCTLNL*QSCIFMLVA--QTTFITC 191
           A L+   + I   LC  ++  SC F+LVA  Q TF TC
Sbjct: 222 ACLSDRVRSIERSLCFTSISISCTFLLVAGTQLTFATC 259


>AL117193-7|CAB60301.2|  346|Caenorhabditis elegans Hypothetical
           protein Y105C5A.11 protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 370 TKLSFLATWTPGDRRPFLCTVDIHATLASIEKCITAILCTLNL 242
           T+L   A ++  D  PF C  D H  L+ +E  + A   +L++
Sbjct: 3   TRLIIPANFSYDDPLPFTCNEDSHVMLSVLEYLVQATYLSLSV 45


>Z66515-2|CAA91353.1|  543|Caenorhabditis elegans Hypothetical
           protein R53.3a protein.
          Length = 543

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 359 FSCHVDPRGSASFSLHGRHTRNACQHRKVH 270
           F CH+ P+    FS       N C+HR+VH
Sbjct: 187 FRCHLCPKSYTQFS-------NLCRHRRVH 209


>S66757-1|AAB28819.1|  581|Caenorhabditis elegans Egl-43 protein.
          Length = 581

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 359 FSCHVDPRGSASFSLHGRHTRNACQHRKVH 270
           F CH+ P+    FS       N C+HR+VH
Sbjct: 187 FRCHLCPKSYTQFS-------NLCRHRRVH 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,003,983
Number of Sequences: 27780
Number of extensions: 153189
Number of successful extensions: 363
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)