Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C12
         (386 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   2.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   3.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   3.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   3.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   4.9  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   6.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.5  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -1

Query: 338 RGSASFSLHGRHTRNACQHRKVHHCDPLYPQSLTKLYF 225
           RGS+    HG HT         HH      QSL  L++
Sbjct: 330 RGSSPHHQHGNHTMGPTM-GPPHHHHHHQTQSLQHLHY 366


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 281 RKVHHCDPLYPQSLTKLYFHVGCADH 204
           RKVH   P  PQ+ TK       +DH
Sbjct: 243 RKVHATKPPKPQTKTKPTSPYHVSDH 268


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 142 FTHHLGWFCG 113
           ++H LGW CG
Sbjct: 527 WSHVLGWLCG 536


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 142 FTHHLGWFCG 113
           ++H LGW CG
Sbjct: 580 WSHVLGWLCG 589


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = -2

Query: 346 WTPGDRR--PFLCTVDIHATLASIEK 275
           W  G +R     CTV +H T+ S +K
Sbjct: 93  WVAGAQRGNEQRCTVTMHGTVQSYDK 118


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/25 (36%), Positives = 10/25 (40%)
 Frame = +1

Query: 277 FLCWQALRVCLPCREKDADPRGSTW 351
           F C +    CLP R  D D     W
Sbjct: 98  FECSKTSNPCLPHRNSDRDLNIRKW 122


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = -1

Query: 215 CADH--VYNL*IQLWRRACHDGVSRT 144
           CA +  +Y    +L R ACH G S T
Sbjct: 118 CASNGKIYANHCELHRAACHSGSSLT 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,531
Number of Sequences: 438
Number of extensions: 1827
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)