Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C11
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...   115   2e-27
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...   115   2e-27
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    24   6.0  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    24   6.0  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   7.9  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    24   7.9  
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    24   7.9  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  115 bits (277), Expect = 2e-27
 Identities = 53/86 (61%), Positives = 64/86 (74%)
 Frame = +1

Query: 91  FRRFNGWESWPXCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHI 270
           FRRFNG       AQ K+FG TQ RWP KS +F   LL+NAE+NA+ KGLD+D+L+I H+
Sbjct: 60  FRRFNGGVG--RTAQGKEFGVTQARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHV 117

Query: 271 QVNRAPCLRRRTYRAHGRINPYMSSP 348
           QVN AP  RRRTYRAHGR+  Y+SSP
Sbjct: 118 QVNAAPKQRRRTYRAHGRVTAYLSSP 143


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score =  115 bits (276), Expect = 2e-27
 Identities = 53/86 (61%), Positives = 63/86 (73%)
 Frame = +1

Query: 91  FRRFNGWESWPXCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHI 270
           FRRFNG       AQ K+FG TQ RWP KS  F   LL+NAE+NA+ KGLD+D+L+I H+
Sbjct: 60  FRRFNGGVG--RTAQGKEFGVTQARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHV 117

Query: 271 QVNRAPCLRRRTYRAHGRINPYMSSP 348
           QVN AP  RRRTYRAHGR+  Y+SSP
Sbjct: 118 QVNAAPKQRRRTYRAHGRVTAYLSSP 143


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +1

Query: 214 ESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRIN 330
           E ++ YKG D+D  V+  +   +   ++R T  ++   N
Sbjct: 34  EESSSYKGQDIDTSVLYTLSKRKPALVKRSTDASYAPFN 72


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +1

Query: 214 ESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRIN 330
           E ++ YKG D+D  V+  +   +   ++R T  ++   N
Sbjct: 34  EESSSYKGQDIDTSVLYTLSKRKPALVKRSTDASYAPFN 72


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 16  GKKTASSPCCPLPKECDRKEGMHS 87
           GKK+A     P+P   D  E  H+
Sbjct: 534 GKKSAIEAAAPIPTSADTVESKHA 557


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 186 FCRFLGPTTLCGTKLFSLCTXRPTFPPVKTTE 91
           F  FLGP+      L S    +PTF  +K  +
Sbjct: 499 FVSFLGPSVFIAYLLISPIFVKPTFQSLKDVD 530


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 209 FLKSWSRNSADFLGQRP 159
           FLK+W   +  ++G RP
Sbjct: 83  FLKAWREKNGKYIGSRP 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,347,422
Number of Sequences: 5004
Number of extensions: 24120
Number of successful extensions: 62
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)