Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_C11
(350 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 113 5e-26
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 111 1e-25
01_05_0708 + 24477228-24477375,24477823-24477905,24478233-244783... 39 0.001
05_04_0038 + 17403620-17403769,17403975-17404038,17404807-174048... 29 1.4
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 28 2.4
04_04_0716 + 27513201-27513854 27 4.1
01_05_0737 - 24780952-24781100,24781515-24783453 26 9.6
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 113 bits (271), Expect = 5e-26
Identities = 55/86 (63%), Positives = 63/86 (73%)
Frame = +1
Query: 91 FRRFNGWESWPXCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHI 270
FRR+ G +++Q QGRWP KSA F+L LL+NAESNAD KGLDVD L + HI
Sbjct: 72 FRRYCGGVGRTAQVKSRQ-SNGQGRWPAKSARFILDLLKNAESNADVKGLDVDNLFVSHI 130
Query: 271 QVNRAPCLRRRTYRAHGRINPYMSSP 348
QVN+A RRRTYRAHGRINPYMSSP
Sbjct: 131 QVNQAQKQRRRTYRAHGRINPYMSSP 156
Score = 30.7 bits (66), Expect = 0.34
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 2 EXRHEVRKLPLRRAVRYLKNVTEKKECIP 88
E +RKLPL +A RYL++V K+ IP
Sbjct: 43 ETAFALRKLPLVKAKRYLEDVIAHKQAIP 71
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 111 bits (267), Expect = 1e-25
Identities = 57/87 (65%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
Frame = +1
Query: 91 FRRFNGWESWPXCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDH 267
FRR+ G AQAK + QGRWP KSA F+L LL+NAESNA+ KGLDVD L + H
Sbjct: 60 FRRYCGGVG--RTAQAKSRHSNGQGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSH 117
Query: 268 IQVNRAPCLRRRTYRAHGRINPYMSSP 348
IQVN+A RRRTYRAHGRINPYMSSP
Sbjct: 118 IQVNQAQKQRRRTYRAHGRINPYMSSP 144
Score = 31.9 bits (69), Expect = 0.15
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 2 EXRHEVRKLPLRRAVRYLKNVTEKKECIP 88
E +RKLPL +A RYL++V K+ IP
Sbjct: 31 ETAFAIRKLPLGKAKRYLEDVIAHKQAIP 59
>01_05_0708 +
24477228-24477375,24477823-24477905,24478233-24478391,
24478882-24478992,24479098-24479164,24479269-24479537
Length = 278
Score = 38.7 bits (86), Expect = 0.001
Identities = 18/52 (34%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = +1
Query: 172 KKSAEFLLQLLRNAESNADYK-GLDVDRLVIDHIQVNRAPCLRRRTYRAHGR 324
K++A+ + Q++ +A +NA + GLD D+L+++ V + L+R +Y A GR
Sbjct: 159 KRAAKTVYQVIHSARANAAHNHGLDPDKLIVEEAFVGKGLYLKRLSYHAKGR 210
>05_04_0038 +
17403620-17403769,17403975-17404038,17404807-17404865,
17404981-17405056,17405196-17405267,17405411-17405498,
17405617-17405872,17405972-17406087,17406757-17406977,
17407074-17407102,17407192-17407291,17407405-17407492,
17407640-17407874
Length = 517
Score = 28.7 bits (61), Expect = 1.4
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 100 FNGWESWPXCAQAKQFGTTQ-GRWPKKSAEFLLQLLRN 210
F G+ SW A FG+T+ R P++SA + L+N
Sbjct: 460 FGGYNSWHYGLVAVDFGSTERRRQPRRSASWYSDFLKN 497
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 172 KKSAEFLLQLLRNAE--SNADYKGLDVDRLVIDHIQVNRAPCLR 297
K EF Q+ + +E S + + L + + I H+ + APCLR
Sbjct: 1033 KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLSGSSAPCLR 1076
>04_04_0716 + 27513201-27513854
Length = 217
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Frame = +1
Query: 25 TASSPCCPLPKECDRKEGMHSXFR--RFNGWESW 120
T+SS PK+ R +G H +R R W W
Sbjct: 25 TSSSSATVAPKKRPRNDGRHPTYRGVRMRSWGKW 58
>01_05_0737 - 24780952-24781100,24781515-24783453
Length = 695
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 262 DHIQVNRAPCLRRRT 306
DH+Q N AP RRRT
Sbjct: 675 DHLQTNGAPTARRRT 689
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,303,380
Number of Sequences: 37544
Number of extensions: 174177
Number of successful extensions: 422
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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