Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C11
         (350 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X53777-1|CAA37793.1|  184|Homo sapiens protein ( Human L23 mRNA ...   143   2e-34
BC106031-1|AAI06032.1|  184|Homo sapiens ribosomal protein L17 p...   143   2e-34
BC066323-1|AAH66323.1|  184|Homo sapiens ribosomal protein L17 p...   143   2e-34
BC017831-1|AAH17831.1|  184|Homo sapiens ribosomal protein L17 p...   143   2e-34
BC000502-1|AAH00502.1|  184|Homo sapiens ribosomal protein L17 p...   143   2e-34
AB061824-1|BAB79462.1|  184|Homo sapiens ribosomal protein L17 p...   143   2e-34
BC066324-1|AAH66324.1|  184|Homo sapiens ribosomal protein L17 p...   140   1e-33
AK130593-1|BAC85391.1|  136|Homo sapiens protein ( Homo sapiens ...    64   9e-11
BC052282-1|AAH52282.1|  541|Homo sapiens zinc finger protein 513...    28   7.2  
BC040650-1|AAH40650.1|  378|Homo sapiens ZNF513 protein protein.       28   7.2  
AK096933-1|BAC04903.1|  479|Homo sapiens protein ( Homo sapiens ...    28   7.2  
AK056765-1|BAB71274.1|  373|Homo sapiens protein ( Homo sapiens ...    28   7.2  
AC074117-6|AAY14845.1|  541|Homo sapiens unknown protein.              28   7.2  
AB075875-1|BAD38657.1|  479|Homo sapiens putative protein produc...    28   7.2  
S72883-1|AAB31800.1|  625|Homo sapiens myotonin protein kinase p...    28   9.5  
AB209363-1|BAD92600.1|  672|Homo sapiens myotonic dystrophy prot...    28   9.5  

>X53777-1|CAA37793.1|  184|Homo sapiens protein ( Human L23 mRNA for
           putative ribosomal protein. ).
          Length = 184

 Score =  143 bits (346), Expect = 2e-34
 Identities = 67/86 (77%), Positives = 75/86 (87%)
 Frame = +1

Query: 91  FRRFNGWESWPXCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHI 270
           FRR+NG      CAQAKQ+G TQGRWPKKSAEFLL +L+NAESNA+ KGLDVD LVI+HI
Sbjct: 60  FRRYNGGVG--RCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHI 117

Query: 271 QVNRAPCLRRRTYRAHGRINPYMSSP 348
           QVN+AP +RRRTYRAHGRINPYMSSP
Sbjct: 118 QVNKAPKMRRRTYRAHGRINPYMSSP 143



 Score = 32.7 bits (71), Expect = 0.34
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +2

Query: 2   EXRHEVRKLPLRRAVRYLKNVTEKKECIP 88
           E    ++ + +R+A +YLK+VT +K+C+P
Sbjct: 31  ETAQAIKGMHIRKATKYLKDVTLQKQCVP 59


>BC106031-1|AAI06032.1|  184|Homo sapiens ribosomal protein L17
           protein.
          Length = 184

 Score =  143 bits (346), Expect = 2e-34
 Identities = 67/86 (77%), Positives = 75/86 (87%)
 Frame = +1

Query: 91  FRRFNGWESWPXCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHI 270
           FRR+NG      CAQAKQ+G TQGRWPKKSAEFLL +L+NAESNA+ KGLDVD LVI+HI
Sbjct: 60  FRRYNGGVG--RCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHI 117

Query: 271 QVNRAPCLRRRTYRAHGRINPYMSSP 348
           QVN+AP +RRRTYRAHGRINPYMSSP
Sbjct: 118 QVNKAPKMRRRTYRAHGRINPYMSSP 143



 Score = 32.7 bits (71), Expect = 0.34
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +2

Query: 2   EXRHEVRKLPLRRAVRYLKNVTEKKECIP 88
           E    ++ + +R+A +YLK+VT +K+C+P
Sbjct: 31  ETAQAIKGMHIRKATKYLKDVTLQKQCVP 59


>BC066323-1|AAH66323.1|  184|Homo sapiens ribosomal protein L17
           protein.
          Length = 184

 Score =  143 bits (346), Expect = 2e-34
 Identities = 67/86 (77%), Positives = 75/86 (87%)
 Frame = +1

Query: 91  FRRFNGWESWPXCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHI 270
           FRR+NG      CAQAKQ+G TQGRWPKKSAEFLL +L+NAESNA+ KGLDVD LVI+HI
Sbjct: 60  FRRYNGGVG--RCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHI 117

Query: 271 QVNRAPCLRRRTYRAHGRINPYMSSP 348
           QVN+AP +RRRTYRAHGRINPYMSSP
Sbjct: 118 QVNKAPKMRRRTYRAHGRINPYMSSP 143



 Score = 32.7 bits (71), Expect = 0.34
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +2

Query: 2   EXRHEVRKLPLRRAVRYLKNVTEKKECIP 88
           E    ++ + +R+A +YLK+VT +K+C+P
Sbjct: 31  ETAQAIKGMHIRKATKYLKDVTLQKQCVP 59


>BC017831-1|AAH17831.1|  184|Homo sapiens ribosomal protein L17
           protein.
          Length = 184

 Score =  143 bits (346), Expect = 2e-34
 Identities = 67/86 (77%), Positives = 75/86 (87%)
 Frame = +1

Query: 91  FRRFNGWESWPXCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHI 270
           FRR+NG      CAQAKQ+G TQGRWPKKSAEFLL +L+NAESNA+ KGLDVD LVI+HI
Sbjct: 60  FRRYNGGVG--RCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHI 117

Query: 271 QVNRAPCLRRRTYRAHGRINPYMSSP 348
           QVN+AP +RRRTYRAHGRINPYMSSP
Sbjct: 118 QVNKAPKMRRRTYRAHGRINPYMSSP 143



 Score = 32.7 bits (71), Expect = 0.34
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +2

Query: 2   EXRHEVRKLPLRRAVRYLKNVTEKKECIP 88
           E    ++ + +R+A +YLK+VT +K+C+P
Sbjct: 31  ETAQAIKGMHIRKATKYLKDVTLQKQCVP 59


>BC000502-1|AAH00502.1|  184|Homo sapiens ribosomal protein L17
           protein.
          Length = 184

 Score =  143 bits (346), Expect = 2e-34
 Identities = 67/86 (77%), Positives = 75/86 (87%)
 Frame = +1

Query: 91  FRRFNGWESWPXCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHI 270
           FRR+NG      CAQAKQ+G TQGRWPKKSAEFLL +L+NAESNA+ KGLDVD LVI+HI
Sbjct: 60  FRRYNGGVG--RCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHI 117

Query: 271 QVNRAPCLRRRTYRAHGRINPYMSSP 348
           QVN+AP +RRRTYRAHGRINPYMSSP
Sbjct: 118 QVNKAPKMRRRTYRAHGRINPYMSSP 143



 Score = 32.7 bits (71), Expect = 0.34
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +2

Query: 2   EXRHEVRKLPLRRAVRYLKNVTEKKECIP 88
           E    ++ + +R+A +YLK+VT +K+C+P
Sbjct: 31  ETAQAIKGMHIRKATKYLKDVTLQKQCVP 59


>AB061824-1|BAB79462.1|  184|Homo sapiens ribosomal protein L17
           protein.
          Length = 184

 Score =  143 bits (346), Expect = 2e-34
 Identities = 67/86 (77%), Positives = 75/86 (87%)
 Frame = +1

Query: 91  FRRFNGWESWPXCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHI 270
           FRR+NG      CAQAKQ+G TQGRWPKKSAEFLL +L+NAESNA+ KGLDVD LVI+HI
Sbjct: 60  FRRYNGGVG--RCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHI 117

Query: 271 QVNRAPCLRRRTYRAHGRINPYMSSP 348
           QVN+AP +RRRTYRAHGRINPYMSSP
Sbjct: 118 QVNKAPKMRRRTYRAHGRINPYMSSP 143



 Score = 32.7 bits (71), Expect = 0.34
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +2

Query: 2   EXRHEVRKLPLRRAVRYLKNVTEKKECIP 88
           E    ++ + +R+A +YLK+VT +K+C+P
Sbjct: 31  ETAQAIKGMHIRKATKYLKDVTLQKQCVP 59


>BC066324-1|AAH66324.1|  184|Homo sapiens ribosomal protein L17
           protein.
          Length = 184

 Score =  140 bits (338), Expect = 1e-33
 Identities = 66/86 (76%), Positives = 74/86 (86%)
 Frame = +1

Query: 91  FRRFNGWESWPXCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHI 270
           FRR+NG      CAQAKQ+G TQGRWPKKSAEFLL +L+NAESNA+ KGLDVD LVI+HI
Sbjct: 60  FRRYNGGVG--RCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHI 117

Query: 271 QVNRAPCLRRRTYRAHGRINPYMSSP 348
           QVN+AP +RRRTYRA GRINPYMSSP
Sbjct: 118 QVNKAPKMRRRTYRARGRINPYMSSP 143



 Score = 32.7 bits (71), Expect = 0.34
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +2

Query: 2   EXRHEVRKLPLRRAVRYLKNVTEKKECIP 88
           E    ++ + +R+A +YLK+VT +K+C+P
Sbjct: 31  ETAQAIKGMHIRKATKYLKDVTLQKQCVP 59


>AK130593-1|BAC85391.1|  136|Homo sapiens protein ( Homo sapiens
           cDNA FLJ27083 fis, clone SPL03425. ).
          Length = 136

 Score = 64.5 bits (150), Expect = 9e-11
 Identities = 30/59 (50%), Positives = 43/59 (72%)
 Frame = +1

Query: 169 PKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSS 345
           PK+   F    L+  +SNA++K LD+D L+I+ IQVN+AP +   TYRAHG+INPY++S
Sbjct: 21  PKRVLNFCCTCLK-MQSNAEFKVLDIDSLIIEPIQVNKAPKMHCWTYRAHGQINPYVTS 78


>BC052282-1|AAH52282.1|  541|Homo sapiens zinc finger protein 513
           protein.
          Length = 541

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 168 PTTLCGTKLFSLCTXRPTFPPVKTTEXG 85
           PT  C T  F  CT RP  PP  T + G
Sbjct: 232 PTPPCPTCGFRCCTPRPARPPSPTEQEG 259


>BC040650-1|AAH40650.1|  378|Homo sapiens ZNF513 protein protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 168 PTTLCGTKLFSLCTXRPTFPPVKTTEXG 85
           PT  C T  F  CT RP  PP  T + G
Sbjct: 69  PTPPCPTCGFRCCTPRPARPPSPTEQEG 96


>AK096933-1|BAC04903.1|  479|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39614 fis, clone SMINT2000176, weakly similar to
           ZINC FINGER PROTEIN 83. ).
          Length = 479

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 168 PTTLCGTKLFSLCTXRPTFPPVKTTEXG 85
           PT  C T  F  CT RP  PP  T + G
Sbjct: 170 PTPPCPTCGFRCCTPRPARPPSPTEQEG 197


>AK056765-1|BAB71274.1|  373|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32203 fis, clone PLACE6003038, weakly similar to
           ZINC FINGER PROTEIN 84. ).
          Length = 373

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 168 PTTLCGTKLFSLCTXRPTFPPVKTTEXG 85
           PT  C T  F  CT RP  PP  T + G
Sbjct: 64  PTPPCPTCGFRCCTPRPARPPSPTEQEG 91


>AC074117-6|AAY14845.1|  541|Homo sapiens unknown protein.
          Length = 541

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 168 PTTLCGTKLFSLCTXRPTFPPVKTTEXG 85
           PT  C T  F  CT RP  PP  T + G
Sbjct: 232 PTPPCPTCGFRCCTPRPARPPSPTEQEG 259


>AB075875-1|BAD38657.1|  479|Homo sapiens putative protein product
           of HMFT0656 protein.
          Length = 479

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 168 PTTLCGTKLFSLCTXRPTFPPVKTTEXG 85
           PT  C T  F  CT RP  PP  T + G
Sbjct: 170 PTPPCPTCGFRCCTPRPARPPSPTEQEG 197


>S72883-1|AAB31800.1|  625|Homo sapiens myotonin protein kinase
           protein.
          Length = 625

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -1

Query: 203 KSWSRNSADFLGQRPCVVPNCLACAXXGQLSHPLKRRX-XECIPSF 69
           + W   SA + GQ PC    C  C+  G L    +RR    C P F
Sbjct: 548 RPWLWASARWWGQAPCTAATC--CSLPGSLGLAYRRRFPCSCSPLF 591


>AB209363-1|BAD92600.1|  672|Homo sapiens myotonic dystrophy protein
           kinase variant protein.
          Length = 672

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -1

Query: 203 KSWSRNSADFLGQRPCVVPNCLACAXXGQLSHPLKRRX-XECIPSF 69
           + W   SA + GQ PC    C  C+  G L    +RR    C P F
Sbjct: 595 RPWLWASARWWGQAPCTAATC--CSLPGSLGLAYRRRFPCSCSPLF 638


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,317,670
Number of Sequences: 237096
Number of extensions: 880929
Number of successful extensions: 2034
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2034
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2084089752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)