Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C11
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   132   9e-32
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...    93   5e-20
AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical ...    29   1.2  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  132 bits (318), Expect = 9e-32
 Identities = 64/86 (74%), Positives = 70/86 (81%)
 Frame = +1

Query: 91  FRRFNGWESWPXCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHI 270
           FRRF+G       AQ KQ+ TTQGRWP KSA+FLL LL+NAESNA+YKGLDVD LVI+HI
Sbjct: 62  FRRFHGGIG--RAAQTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHI 119

Query: 271 QVNRAPCLRRRTYRAHGRINPYMSSP 348
            V RA  LRRRTYRAHGRINPYMSSP
Sbjct: 120 NVQRAAKLRRRTYRAHGRINPYMSSP 145



 Score = 29.5 bits (63), Expect = 0.71
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 2   EXRHEVRKLPLRRAVRYLKNVTEKKECIP 88
           E    +R +PLRRA  +L +V E KE +P
Sbjct: 33  EAAMALRGMPLRRAQAFLNHVKEHKEIVP 61


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score = 93.1 bits (221), Expect = 5e-20
 Identities = 43/52 (82%), Positives = 46/52 (88%)
 Frame = +1

Query: 193 LQLLRNAESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSP 348
           L LL+NAESNA+YKGLDVD LVI+HI V RA  LRRRTYRAHGRINPYMSSP
Sbjct: 66  LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSP 117



 Score = 29.9 bits (64), Expect = 0.54
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 2   EXRHEVRKLPLRRAVRYLKNVTEKKECIPXSVVLTGGKVGRXVHKLNSL-VPHRVVGPRN 178
           E    +R +PLRRA  +L +V E KE +P    L   K      +   L V H V+   N
Sbjct: 33  EAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRFLDLLKNAESNAEYKGLDVDHLVIEHIN 92

Query: 179 LQNS 190
           +Q +
Sbjct: 93  VQRA 96


>AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical
           protein H41C03.1 protein.
          Length = 396

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 196 GAGILQISWANDPVWYQTV*LVH 128
           GAG+ +I W N+  W +++ L H
Sbjct: 357 GAGVYKIKWGNEQAWIRSLTLYH 379


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,693,036
Number of Sequences: 27780
Number of extensions: 144228
Number of successful extensions: 367
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)