Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C11
         (350 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   2.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    20   9.8  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +1

Query: 19  KKTASSPCCPLPKECDRKEGMHSXFRRFN-GWESWP 123
           KK     CC +  +C+  E +H  +   + G   WP
Sbjct: 459 KKQQGDTCCWVCDQCEEYEYVHDEYTCMDCGPGKWP 494


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 253  ACQRLNLCSQHLIQHSSKVGAGILQISWANDPVWYQ 146
            A + +N+  QH  Q +++V   ILQ    +  +W Q
Sbjct: 920  ASRSINVKWQHKSQDTTEVTKYILQYKEGDAGIWQQ 955


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 253  ACQRLNLCSQHLIQHSSKVGAGILQISWANDPVWYQ 146
            A + +N+  QH  Q +++V   ILQ    +  +W Q
Sbjct: 916  ASRSINVKWQHKSQDTTEVTKYILQYKEGDAGIWQQ 951


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 184 EFLLQLLRNAESNADYKGL 240
           ++LLQL+RN   ++   G+
Sbjct: 141 QYLLQLIRNLRQSSALDGV 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,584
Number of Sequences: 438
Number of extensions: 1952
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)