Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C09
         (179 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   1.8  
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    24   2.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    23   5.3  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    23   7.1  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    22   9.3  

>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 44  EIKT*GRQLSRRTGYDNVVPTYLNNDGGGRILSP 145
           +I+   R+LS+    +     Y  N GGGR++SP
Sbjct: 654 DIEALERRLSKAYRMEAQEEAYAINIGGGRVISP 687


>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 176 FARYSTIAGLRGSRCDLPRHCSD 108
           F  Y+T  GLR S   LP H +D
Sbjct: 25  FTAYTTSQGLRVSPVPLPEHNTD 47


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 59  GRQLSRRTGYDNVVPTYLNNDG 124
           G+Q  +  GY+ ++P  +NN G
Sbjct: 89  GQQQQQMYGYNGMMPQTMNNTG 110


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 140 SRCDLPRHCSDTLVRR 93
           S    P HCS TLV+R
Sbjct: 20  SALSYPEHCSITLVKR 35


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 130 TSPVIVQIRWY 98
           TSP+ + +RWY
Sbjct: 323 TSPIEISVRWY 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 733,664
Number of Sequences: 5004
Number of extensions: 11067
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)