Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C09
         (179 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0605 + 19908541-19909605,19909703-19910092                       27   2.8  
12_01_0294 + 2230539-2230870,2232179-2232574,2232676-2232834,223...    25   6.5  
05_03_0338 + 12652966-12653017,12653813-12653860,12653924-126540...    25   6.5  

>07_03_0605 + 19908541-19909605,19909703-19910092
          Length = 484

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 71  SRRTGYDNVVPTYLNNDGGG 130
           SR  G +   PT  NNDGGG
Sbjct: 322 SREDGKERKKPTLTNNDGGG 341


>12_01_0294 +
           2230539-2230870,2232179-2232574,2232676-2232834,
           2233109-2233505
          Length = 427

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 146 RGSRCDLPRHCSDTLVRRYHNR 81
           R SRCDLPR  +  ++ +  NR
Sbjct: 103 RPSRCDLPRFNARNMLEKLRNR 124


>05_03_0338 +
           12652966-12653017,12653813-12653860,12653924-12654080,
           12654104-12654206,12654866-12655111,12655802-12656204,
           12656257-12656354,12656460-12657044,12657120-12657566
          Length = 712

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 155 AGLRGSRCDLPRHCSDTLV--RRYHNRFFLIIVS 60
           A L+G R ++P  CSD LV   +   +FF + VS
Sbjct: 284 AVLKGPRLEIPLFCSDDLVDWLKQCEKFFELTVS 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,748,296
Number of Sequences: 37544
Number of extensions: 69928
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)