Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C09
         (179 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC111958-1|AAI11959.1|  710|Homo sapiens ral guanine nucleotide ...    29   2.7  
BC101756-1|AAI01757.1|  710|Homo sapiens ral guanine nucleotide ...    29   2.7  
AK074082-1|BAB84908.1|  497|Homo sapiens FLJ00153 protein protein.     29   2.7  
AF247727-1|AAK51115.1|  186|Homo sapiens AKAP350C protein.             28   6.2  

>BC111958-1|AAI11959.1|  710|Homo sapiens ral guanine nucleotide
           dissociation stimulator-like 3 protein.
          Length = 710

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 141 LKMRPPPSLFRYVGTTLS*PVLLDNCLPQV 52
           L  +PPP    Y+GT L+  V+LD  LP +
Sbjct: 412 LPSKPPPGPVPYLGTFLTDLVMLDTALPDM 441


>BC101756-1|AAI01757.1|  710|Homo sapiens ral guanine nucleotide
           dissociation stimulator-like 3 protein.
          Length = 710

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 141 LKMRPPPSLFRYVGTTLS*PVLLDNCLPQV 52
           L  +PPP    Y+GT L+  V+LD  LP +
Sbjct: 412 LPSKPPPGPVPYLGTFLTDLVMLDTALPDM 441


>AK074082-1|BAB84908.1|  497|Homo sapiens FLJ00153 protein protein.
          Length = 497

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 141 LKMRPPPSLFRYVGTTLS*PVLLDNCLPQV 52
           L  +PPP    Y+GT L+  V+LD  LP +
Sbjct: 209 LPSKPPPGPVPYLGTFLTDLVMLDTALPDM 238


>AF247727-1|AAK51115.1|  186|Homo sapiens AKAP350C protein.
          Length = 186

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 101 VRRYHNRFFLIIVSLKFLF 45
           V+R+H  FFLII+ LK +F
Sbjct: 146 VKRFHFVFFLIIIKLKHIF 164


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,428,999
Number of Sequences: 237096
Number of extensions: 386461
Number of successful extensions: 4385
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4385
length of database: 76,859,062
effective HSP length: 39
effective length of database: 67,612,318
effective search space used: 1352246360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)