Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C09
         (179 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73898-7|CAA98070.1|  577|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AF098989-3|AAK18953.2|  569|Caenorhabditis elegans Hypothetical ...    25   5.4  
U39851-2|AAF99874.1|  540|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>Z73898-7|CAA98070.1|  577|Caenorhabditis elegans Hypothetical
           protein ZK822.5a protein.
          Length = 577

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 178 FSLGTLQLLVYGAQDATSPVIVQIRWYDVIITG 80
           F++  + +++Y    A SPV+   +WY V+I G
Sbjct: 142 FTIVYMSVVLYAPSVALSPVLQINKWYLVLIFG 174


>AF098989-3|AAK18953.2|  569|Caenorhabditis elegans Hypothetical
           protein F47G6.2 protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 162 YNCWFTGLKMRPPPSLFRYVGTTL 91
           YN W TG+   PPP    +   T+
Sbjct: 13  YNGWVTGVSKAPPPKQIDFDSQTI 36


>U39851-2|AAF99874.1|  540|Caenorhabditis elegans Hypothetical
           protein C23G10.6 protein.
          Length = 540

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 143 GSRCDLPRHCSDTLVRRYHNRFFLIIVS 60
           GS  +   H +DTL    HN  FLI V+
Sbjct: 69  GSHMNFMAHLADTLTEAGHNVTFLIPVA 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,068,997
Number of Sequences: 27780
Number of extensions: 61555
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)