Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C08
         (171 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    23   5.4  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    22   9.4  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    22   9.4  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         22   9.4  

>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 107 NIINDTYIEVQSRFAHSKAFFYFLLLILKC 18
           +I+ND+Y       AH     Y  LLI  C
Sbjct: 161 SIVNDSYASSLCLMAHPHQLAYAALLISCC 190


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 121 FNDFCLNNILF 153
           FN FC++N LF
Sbjct: 306 FNQFCIDNTLF 316


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 42  IEKGFRMCKSTLY 80
           +EKGFRM +S ++
Sbjct: 372 VEKGFRMARSNVF 384


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 68  FAHSKAFFYFLLLILKCLV 12
           F+HS  F YF L ++  LV
Sbjct: 56  FSHSLLFVYFFLTLIILLV 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 529,012
Number of Sequences: 5004
Number of extensions: 6958
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 37
effective length of database: 2,177,330
effective search space used: 41369270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)