Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C08
         (171 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93375-2|CAB07564.2|  359|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z81492-2|CAB04027.1|  458|Caenorhabditis elegans Hypothetical pr...    25   9.5  
AL132862-30|CAB60565.3|  716|Caenorhabditis elegans Hypothetical...    25   9.5  

>Z93375-2|CAB07564.2|  359|Caenorhabditis elegans Hypothetical
           protein C38C6.4 protein.
          Length = 359

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 92  YHL*YFYVINSMIFV*IIYYLI 157
           Y+L  FY+  ++IF+ + YYL+
Sbjct: 32  YYLFVFYIQIALIFIVLFYYLL 53


>Z81492-2|CAB04027.1|  458|Caenorhabditis elegans Hypothetical
           protein E03H4.5 protein.
          Length = 458

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 36  QKIEKGFRMCKSTLYFY 86
           +K+EKG  MC   +Y+Y
Sbjct: 155 KKVEKGLTMCVLPVYYY 171


>AL132862-30|CAB60565.3|  716|Caenorhabditis elegans Hypothetical
           protein Y73F8A.1 protein.
          Length = 716

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 104 IINDTYIEVQSRFAHSK 54
           IIND+Y+EV++  A  K
Sbjct: 530 IINDSYVEVKAELARKK 546


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,409
Number of Sequences: 27780
Number of extensions: 39005
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 12,740,198
effective HSP length: 37
effective length of database: 11,712,338
effective search space used: 222534422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)