Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C07
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    28   0.66 
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    25   6.1  
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    25   6.1  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    24   8.1  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    24   8.1  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    24   8.1  

>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.9 bits (59), Expect = 0.66
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 261 YGAVTSTKYAMIEFQSMSDQIINRIDEMGTRVDELEKDITD 383
           Y      + A IE Q   D  I R   + TR+D+LE  IT+
Sbjct: 794 YPKYMEEELAAIEAQMKQDMEIARARTIKTRIDQLETSITE 834


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +3

Query: 147 ISYYLIMAEQPTDTVAIPTENEYSTPANDPKNMQEVTQY 263
           +S Y + + QPT T +IP         + P N    T Y
Sbjct: 1   MSSYALPSMQPTPTSSIPLRQMSQPTTSAPSNSASSTPY 39


>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 16/68 (23%), Positives = 35/68 (51%)
 Frame = +3

Query: 183 DTVAIPTENEYSTPANDPKNMQEVTQYGAVTSTKYAMIEFQSMSDQIINRIDEMGTRVDE 362
           +  A+ TE+  +T A   + MQE  +     S   ++ + + + D+I + +D  G   + 
Sbjct: 90  EQAAMTTESLKNTMAT-VQTMQETARQLKSQSKNVSIEKIEKLQDEIQDYMDAAGELNEV 148

Query: 363 LEKDITDL 386
           L +++TD+
Sbjct: 149 LGQNMTDI 156


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 16/72 (22%), Positives = 30/72 (41%)
 Frame = +3

Query: 171 EQPTDTVAIPTENEYSTPANDPKNMQEVTQYGAVTSTKYAMIEFQSMSDQIINRIDEMGT 350
           E+  D V     +  S+P N   N  + T      + +  + +     D ++  ID++G 
Sbjct: 354 EETADAVVTLVPSHSSSPVNYSINSAKSTPASIKVNEEILVADHNVSDDILMEEIDDVG- 412

Query: 351 RVDELEKDITDL 386
            + E + D  DL
Sbjct: 413 -ITEADFDYFDL 423


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 179 YGYSSNPN*K*ILDTSERSKEYAGGDPIW 265
           Y Y   P+    LD ++R  EY GG  IW
Sbjct: 343 YEYMGRPS---ALDYAKRLTEYCGGAHIW 368


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 91  SSNPIHTANLTPKISYSQSGYSTNIIRKPL 2
           S + + + N+TPK + +Q    TNI+  P+
Sbjct: 178 SLSDLPSTNVTPKKTTTQIDVQTNIVTPPI 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,669,367
Number of Sequences: 5004
Number of extensions: 32335
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)