Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C07
         (415 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0118 - 12492206-12492415,12492746-12492816,12493611-124936...    36   0.013
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286...    29   1.9  
07_01_0757 - 5827536-5827751,5828016-5828159                           28   2.6  
07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524     28   3.4  
07_03_1696 - 28779455-28779733,28779813-28780074,28780805-287809...    27   4.5  
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    27   4.5  

>09_03_0118 -
           12492206-12492415,12492746-12492816,12493611-12493634,
           12494061-12494114,12494803-12496345
          Length = 633

 Score = 35.9 bits (79), Expect = 0.013
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +3

Query: 333 IDEMGTRVDELEKDITDLMTEAGVE 407
           +DEMGT++DELE+ + DL  E G +
Sbjct: 594 LDEMGTKIDELEQSVNDLKAEMGTD 618


>01_01_0365 -
           2859617-2859722,2860047-2860489,2862232-2862391,
           2863431-2863516,2863648-2866272
          Length = 1139

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 203 SWDCYCIRRLFSHY*VITNYTVSCYSXTKQRYSIILIFEQSYTHGK 66
           +WD Y  R L S   ++ +Y  SC+  TKQ   I +      TH K
Sbjct: 861 NWDTY--RALLSGISLMLHYDFSCFRGTKQYIQISVYELMDSTHNK 904


>07_01_0757 - 5827536-5827751,5828016-5828159
          Length = 119

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 7/37 (18%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 296 YHCILCRSDCTILGHLLH-ILWIVRWCRVFIFSWDCY 189
           Y C++   D +++  L   ++W+++W  +F+ ++  +
Sbjct: 62  YVCLVIHDDLSLIQTLFFLVVWVIQWLVIFVMTYSAF 98


>07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524
          Length = 652

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
 Frame = +3

Query: 198 PTENEYS--TPANDPKNMQEVTQYGAVTSTKYAMIEFQSMSDQIINRIDEMGT-RVDELE 368
           P  N Y   TP + P NMQ   Q+G          + Q +   I+  ++ + T ++  +E
Sbjct: 442 PAYNSYRPPTPPSMPSNMQNAGQWGVNPGYPQPSSDPQGLIRNILGALEVLKTEKIPPIE 501

Query: 369 KDITDLMT--EAGVEN 410
           + I+D +   EA + N
Sbjct: 502 QHISDCIRYGEANLPN 517


>07_03_1696 -
           28779455-28779733,28779813-28780074,28780805-28780956,
           28781765-28781961,28782258-28782462,28782737-28782982,
           28783603-28783719,28784206-28784397,28784480-28784693,
           28784835-28784926,28784952-28785001,28785494-28785812,
           28785908-28786068,28786407-28786650,28787212-28787467,
           28787634-28787834,28788568-28788910,28789003-28789064,
           28789645-28789851,28790170-28790978
          Length = 1535

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 16/56 (28%), Positives = 32/56 (57%)
 Frame = +3

Query: 171 EQPTDTVAIPTENEYSTPANDPKNMQEVTQYGAVTSTKYAMIEFQSMSDQIINRID 338
           ++ T  V    + + ++PA+   N    +QYG VT +KY ++  +  +D++I +ID
Sbjct: 847 KEQTSEVHGARKRKETSPADSGLN----SQYG-VTESKYELVANKDSADELIRKID 897


>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
            30062391-30062464,30062547-30062629,30063044-30063147,
            30063526-30063665,30063736-30063783,30063939-30063991,
            30064178-30064262,30064346-30064412,30064496-30064606,
            30065262-30065283,30066244-30071110,30071186-30071374,
            30071463-30071577,30072329-30073388,30074247-30074694,
            30074966-30075019,30075105-30076898,30076989-30077949,
            30078271-30078384,30078459-30078613,30078934-30079026,
            30079341-30079613,30093423-30093975,30094465-30094540,
            30094619-30094718
          Length = 4025

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 308  TLKFYHCILCR-SDCTILGHLLHILWIVRWCRVFIFSWDCYCIRRLFSH 165
            T+ F  C   + S  T++G L+ I W +R  RV +F    +   +  SH
Sbjct: 1926 TVLFCKCDSAKDSSMTLIGKLIEIWWTLRRRRVSLFGHAAHAYFQYLSH 1974


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,048,425
Number of Sequences: 37544
Number of extensions: 180348
Number of successful extensions: 496
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)