Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C06
         (366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    28   0.39 
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    27   0.91 
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   2.1  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    25   4.9  
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c...    24   6.4  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.5  
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    24   8.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   8.5  

>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 28.3 bits (60), Expect = 0.39
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 189 IFVCLSVLFVPGNLRKGWTDF 127
           I VCL+V+F   N+R  W+DF
Sbjct: 434 ILVCLAVIFYVFNIRIHWSDF 454


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 27.1 bits (57), Expect = 0.91
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -1

Query: 339 LTVKVDHIYYIKSILINKIEMSVCNIKITVILLNTYVCIYDTYTKN 202
           LT+K+D I   K  LIN++E  + + ++ V  LN  +  Y    K+
Sbjct: 532 LTLKIDSITKEKDRLINELEQRIKSYEVNVSELNGTIDEYRNKLKD 577


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 81  SKLGVVASAIPKKTRQNRSSLSGDYPEQTAQTDRQK 188
           S+L +VAS++  + + N+   SG Y ++ ++ D +K
Sbjct: 631 SRLQMVASSLGFRPKDNKDKESGGYNKRNSKIDLKK 666


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 203 IHLLIFLSVCLCCLFRV 153
           +H+ I L+VCLC  F +
Sbjct: 40  VHITIGLNVCLCLFFAI 56


>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 169

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 166 QHRQTDKNISKCIFGVGIVYTYICI 240
           QHR+  +N  KC   V I   YI I
Sbjct: 120 QHRRNSQNKLKCAMEVNIKTNYIVI 144


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -1

Query: 291 NKIEMSVCN-IKITVIL-LNTYVCIYDTYTKNTLTNIFV 181
           N  ++S  N I + +IL LNT VCI+  Y K  L N ++
Sbjct: 18  NNFQVSCFNPILLKIILFLNTIVCIFYVY-KIALCNEYI 55


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 210 TKNTLTNIFVCLSVLFVPGNLRKGWTDFD 124
           TK+ L + +  L ++FVP  L  GW +++
Sbjct: 53  TKSVLMSSYFNLMLVFVPIGLIAGWFEWN 81


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 121  PVKIGPAFPEITRNKQHRQTDKNISKCI 204
            P +I P + +I  N + ++TD   S CI
Sbjct: 4169 PDEIPPGWLDIPENSKRKRTDIYFSMCI 4196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,323,868
Number of Sequences: 5004
Number of extensions: 25887
Number of successful extensions: 65
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)