Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C06
         (366 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0106 - 11898493-11901471                                         29   1.1  
10_08_1021 - 22315487-22315493,22317051-22317154,22317227-223173...    27   3.4  
03_01_0013 - 105281-105552,105762-105838,105839-106524,106655-10...    27   3.4  
03_05_0192 + 21809251-21809413,21809553-21809720,21809858-21810120     27   4.5  
05_01_0592 + 5332067-5332233,5332326-5332488,5332572-5332642,533...    27   6.0  
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874...    26   7.9  

>06_02_0106 - 11898493-11901471
          Length = 992

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 253 SYFTKYICMYIRYLHQKYTY*YFCL 179
           S FT  ICMY R+ + +Y +  FCL
Sbjct: 680 SLFTSAICMYSRFNNLEYCHNLFCL 704


>10_08_1021 -
           22315487-22315493,22317051-22317154,22317227-22317328,
           22317623-22317745,22318038-22318094,22318498-22318758,
           22318948-22319377,22320168-22320286,22320515-22320595
          Length = 427

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 106 LYQKKPVKIGPAFPEITRN 162
           LY++KP ++ PA P +T N
Sbjct: 215 LYEQKPEELAPALPPVTEN 233


>03_01_0013 -
           105281-105552,105762-105838,105839-106524,106655-106738,
           106914-107114,107202-107309,107766-107855,108505-108551,
           109096-109276,110010-110135,110220-110386,110877-111072
          Length = 744

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 161 TNSTDRQTKILVSVFLV*VSYIHTYVFSKI 250
           TN TD+Q KIL  V  +  +  H Y+FS I
Sbjct: 227 TNKTDKQFKILKHVIQLRKASSHPYLFSGI 256


>03_05_0192 + 21809251-21809413,21809553-21809720,21809858-21810120
          Length = 197

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 218 IPTPKIHLLIFLSVCLCCLFRVISGKA 138
           +PTP I+  ++L++CL  L    +GKA
Sbjct: 18  LPTPVINKEVYLAICLTVLAGTRAGKA 44


>05_01_0592 +
           5332067-5332233,5332326-5332488,5332572-5332642,
           5333311-5333420,5333457-5333528,5333599-5333634,
           5333635-5334071
          Length = 351

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 231 VCIYDTYTKNTLTNIFVCLSVLFVPGNLRKGWTDFD 124
           VCI+D        N+F    V++   N+  GWT+FD
Sbjct: 162 VCIFDLVVGG---NLFTDKVVVYDLDNMMVGWTEFD 194


>03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,
            8746665-8746893,8747314-8747420,8747560-8747622,
            8747883-8747983,8748996-8749090,8749330-8749350,
            8749987-8750082,8750188-8750308,8750415-8750570,
            8750679-8750869,8751207-8751478,8751853-8751954,
            8752006-8752038,8752132-8752308,8752397-8752466,
            8752512-8752585,8752667-8752908,8752983-8753129,
            8753526-8753751,8753893-8753970,8754378-8754521,
            8754829-8755008,8755335-8755394,8755484-8755523,
            8758653-8759137
          Length = 1294

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 212  TPKIHLLIFLSVCLCCLFRVISGKAGPIL 126
            T + H L  L+   C L   +SG+A P+L
Sbjct: 1196 TRRWHFLGTLAALACALLAAVSGRAAPLL 1224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,289,214
Number of Sequences: 37544
Number of extensions: 127688
Number of successful extensions: 248
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)