Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_C06
(366 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92825-4|CAB07312.1| 467|Caenorhabditis elegans Hypothetical pr... 31 0.33
AF039716-7|AAB96735.3| 617|Caenorhabditis elegans Sodium:neurot... 30 0.58
Z95559-5|CAB63362.2| 326|Caenorhabditis elegans Hypothetical pr... 26 7.2
Z82278-3|CAB05255.1| 347|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z81589-11|CAI58924.1| 330|Caenorhabditis elegans Hypothetical p... 26 9.5
Z81555-8|CAB04512.2| 330|Caenorhabditis elegans Hypothetical pr... 26 9.5
U97593-7|AAB52878.1| 591|Caenorhabditis elegans Prion-like-(q/n... 26 9.5
U97593-6|AAB52879.2| 925|Caenorhabditis elegans Prion-like-(q/n... 26 9.5
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n... 26 9.5
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q... 26 9.5
>Z92825-4|CAB07312.1| 467|Caenorhabditis elegans Hypothetical
protein C13C4.6 protein.
Length = 467
Score = 30.7 bits (66), Expect = 0.33
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -1
Query: 342 FLTVKVDHIYYIKSI-LINKIEMSVCNIKITVILLNTYVCIYDTYTKNTLTNIFVCLSVL 166
F+ V D K I +IN + ++VC + + + L+ TY YD+ TL +I + +
Sbjct: 298 FVGVIADRTRKFKLIAIINALVVAVCVLVLRLYLIKTYTGWYDSVIVCTLLSIIMSCCAI 357
Query: 165 FVP-GN 151
P GN
Sbjct: 358 HTPIGN 363
>AF039716-7|AAB96735.3| 617|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 1
protein.
Length = 617
Score = 29.9 bits (64), Expect = 0.58
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 236 HMYVYTIPTPKIHLLIFLSVCLCCLFRVISGKAGPILTGF 117
+M Y PK+ + L++C+C +F VI+ A +L+ F
Sbjct: 361 YMLAYVSYLPKLWSGVLLTICICTMFSVITILALSVLSTF 400
>Z95559-5|CAB63362.2| 326|Caenorhabditis elegans Hypothetical
protein Y41E3.12 protein.
Length = 326
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = -1
Query: 345 IFLTVKVDHIYYIKSILINKIEMSV----CNIKITVILLNTYVCIYDTYT 208
IF T + H+ Y +++ ++M C I T++++ + C+Y T+T
Sbjct: 58 IFKTNLIKHVCYKIIVVLAFVDMMATACSCFITGTLLVIGSVFCMYPTFT 107
>Z82278-3|CAB05255.1| 347|Caenorhabditis elegans Hypothetical
protein M162.3 protein.
Length = 347
Score = 25.8 bits (54), Expect = 9.5
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = -1
Query: 345 IFLTVKVDHIYYIKSILINKIEMSV--CNIKIT--VILLNTYVCIYDTYT 208
IF T + H Y +L+ I+++ C+ IT ++++ T C+Y T+T
Sbjct: 58 IFKTKLIRHPCYKIIVLLALIDITATCCSCLITGPMLIMGTVFCMYPTFT 107
>Z81589-11|CAI58924.1| 330|Caenorhabditis elegans Hypothetical
protein F58E10.6 protein.
Length = 330
Score = 25.8 bits (54), Expect = 9.5
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -1
Query: 300 ILINKIEMSVCNIKITVILLNTYVCIYDTY 211
I++ K +C++K ++LL+ I D Y
Sbjct: 36 IILTKTPRKICSVKFNMVLLHIVGAIVDLY 65
>Z81555-8|CAB04512.2| 330|Caenorhabditis elegans Hypothetical
protein F58E10.6 protein.
Length = 330
Score = 25.8 bits (54), Expect = 9.5
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -1
Query: 300 ILINKIEMSVCNIKITVILLNTYVCIYDTY 211
I++ K +C++K ++LL+ I D Y
Sbjct: 36 IILTKTPRKICSVKFNMVLLHIVGAIVDLY 65
>U97593-7|AAB52878.1| 591|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform b protein.
Length = 591
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 117 KTRQNRSSLSGDYPEQTAQTDRQKY 191
+TRQ S+ + +YP QT Q +Q++
Sbjct: 27 ETRQYSSNATSNYPSQTQQYQQQQH 51
>U97593-6|AAB52879.2| 925|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform c protein.
Length = 925
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 117 KTRQNRSSLSGDYPEQTAQTDRQKY 191
+TRQ S+ + +YP QT Q +Q++
Sbjct: 446 ETRQYSSNATSNYPSQTQQYQQQQH 470
>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform a protein.
Length = 1175
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 117 KTRQNRSSLSGDYPEQTAQTDRQKY 191
+TRQ S+ + +YP QT Q +Q++
Sbjct: 611 ETRQYSSNATSNYPSQTQQYQQQQH 635
>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 85
protein.
Length = 2203
Score = 25.8 bits (54), Expect = 9.5
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 87 LGVVASAIPKKTRQNRSSLSGDYPEQTAQTDRQK 188
L + +A+P+KT + LSG Y Q+ +T+RQ+
Sbjct: 1940 LNTLPNALPEKTHDGMAVLSGLY--QSLRTNRQQ 1971
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,168,326
Number of Sequences: 27780
Number of extensions: 145131
Number of successful extensions: 366
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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