Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_C05
(264 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 38 2e-04
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 27 0.32
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 24 4.0
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 24 4.0
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 23 5.3
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer... 23 5.3
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma... 23 7.0
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 23 7.0
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 23 9.2
SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase |Schizosac... 23 9.2
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 23 9.2
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 38.3 bits (85), Expect = 2e-04
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +2
Query: 197 RTKNFAIGQDIQPTRDLSRFVR 262
R ++F IGQDIQP RDLSRFV+
Sbjct: 30 RPRSFGIGQDIQPKRDLSRFVK 51
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 27.5 bits (58), Expect = 0.32
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = +3
Query: 63 ITELKSIQDGXXXXXXXDREKSSGRSTCGEES*AQEDCKPSIPRREQRTLLLARTSSQPE 242
+ K G R + S+ + A + KPS R+Q+TLL S +PE
Sbjct: 1224 VNRTKKKPRGKSTGTRKPRAIAGSSSSTAVKKEASSESKPSTTNRKQQTLLEFAASKEPE 1283
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 23.8 bits (49), Expect = 4.0
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1
Query: 177 YNLLGLNFLHHKW 139
YN GL++L H+W
Sbjct: 881 YNAAGLSYLRHEW 893
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 23.8 bits (49), Expect = 4.0
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +2
Query: 17 SFGVRNRSRIYSWPLD 64
SF + N+ R+Y+W L+
Sbjct: 291 SFAIDNKGRVYAWGLN 306
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 23.4 bits (48), Expect = 5.3
Identities = 8/31 (25%), Positives = 14/31 (45%)
Frame = -1
Query: 168 LGLNFLHHKWSGRYFFPYXXXXXXXXXLEWI 76
LGL +L +W +YF + +W+
Sbjct: 179 LGLAYLIFRWLPKYFIRFVGTREPLATADWL 209
>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 250
Score = 23.4 bits (48), Expect = 5.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 198 LFSE*RVYNLLGLNFLHHKWSGRYFFPY 115
+FS R Y L G H W+ YF P+
Sbjct: 61 IFSSLR-YCLSGQQSAFHLWNAMYFMPF 87
>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 23.0 bits (47), Expect = 7.0
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 249 DRSLVGWMSWPIAKFFVLFSE*RVYNLLGLNFLHH 145
DR L G +PI FF + +L GLN H+
Sbjct: 250 DRILYGRFVFPIISFFQFNVTSGLSSLYGLNAWHY 284
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 23.0 bits (47), Expect = 7.0
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = -3
Query: 232 LDVLANSKVLCSLLGIEGLQ 173
LDVLA S L L IEGLQ
Sbjct: 851 LDVLARSSPLDKQLLIEGLQ 870
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 22.6 bits (46), Expect = 9.2
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 171 DCKPSIPRREQRTLL 215
D KP+I R+E+R LL
Sbjct: 2 DLKPNIRRKEKRNLL 16
>SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 208
Score = 22.6 bits (46), Expect = 9.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 259 HETG*ISGWLDVLANSKVLCSLLGI 185
HET + W+ LA ++V S+ G+
Sbjct: 43 HETNTLVRWVQTLAIAEVFHSIFGL 67
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 22.6 bits (46), Expect = 9.2
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +3
Query: 69 ELKSIQDGXXXXXXXDREKSSGRSTCGEE 155
ELKS+ +G D S S C +E
Sbjct: 215 ELKSVNEGSSCCSKKDSSPSEKPSCCSQE 243
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 933,532
Number of Sequences: 5004
Number of extensions: 13047
Number of successful extensions: 42
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -