Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_C05
(264 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 32 0.073
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 31 0.17
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 31 0.17
03_06_0109 - 31717691-31718311,31719110-31719223,31719316-317196... 28 1.2
07_01_0509 + 3792255-3792661,3792745-3792851,3792949-3793043,379... 26 3.6
06_01_0546 + 3895007-3895888,3896506-3896682 25 6.3
06_01_0543 + 3883184-3884065,3884683-3884859 25 6.3
06_01_0533 + 3845128-3846009,3846627-3846803 25 6.3
02_02_0451 + 10387353-10387580,10387675-10387934,10388160-103884... 25 6.3
10_08_0902 - 21449748-21449993,21450136-21450460,21450658-214509... 25 8.3
06_01_0548 + 3904487-3904711,3904805-3905064,3905284-3905608,390... 25 8.3
06_01_0545 + 3892664-3892888,3892914-3893173,3893393-3893717,389... 25 8.3
06_01_0535 + 3854608-3854832,3854926-3855185,3855405-3855729,385... 25 8.3
03_01_0359 - 2805094-2805175,2805256-2805347,2805443-2805517,280... 25 8.3
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 31.9 bits (69), Expect = 0.073
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 191 EKRTKNFAIGQDIQPTRDLSRFVR 262
EKR K F IG + P +DL RFVR
Sbjct: 27 EKRPKQFGIGGALPPRKDLHRFVR 50
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 30.7 bits (66), Expect = 0.17
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 191 EKRTKNFAIGQDIQPTRDLSRFVR 262
EKR K F IG + P +DL RFV+
Sbjct: 26 EKRPKQFGIGGALPPKKDLHRFVK 49
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 30.7 bits (66), Expect = 0.17
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 191 EKRTKNFAIGQDIQPTRDLSRFVR 262
EKR K F IG + P +DL RFV+
Sbjct: 10 EKRPKQFGIGGALPPKKDLHRFVK 33
>03_06_0109 -
31717691-31718311,31719110-31719223,31719316-31719606,
31719698-31720006,31720098-31720865
Length = 700
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 244 ISGWLDVLANSKVLCSLLGIEGLQSSWAQLSSPQV 140
I+GW D LA S + ++G+E L +SW + + V
Sbjct: 152 INGW-DDLAASALALPVIGVESLYASWLRFRATYV 185
>07_01_0509 +
3792255-3792661,3792745-3792851,3792949-3793043,
3793169-3793245,3793334-3793454,3793533-3793592,
3793672-3793812
Length = 335
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 171 DCKPSIPRREQRTLLLARTSS 233
DC+ ++ R E+RTL +AR SS
Sbjct: 38 DCRLTLLRAERRTLAVARASS 58
>06_01_0546 + 3895007-3895888,3896506-3896682
Length = 352
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 193 EENKELCYWPGHPANQRSI 249
EE + L +WP HPA R +
Sbjct: 169 EEERRLEFWPEHPAALRGL 187
>06_01_0543 + 3883184-3884065,3884683-3884859
Length = 352
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 193 EENKELCYWPGHPANQRSI 249
EE + L +WP HPA R +
Sbjct: 169 EEERRLEFWPEHPAALRGL 187
>06_01_0533 + 3845128-3846009,3846627-3846803
Length = 352
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 193 EENKELCYWPGHPANQRSI 249
EE + L +WP HPA R +
Sbjct: 169 EEERRLEFWPEHPAALRGL 187
>02_02_0451 +
10387353-10387580,10387675-10387934,10388160-10388484,
10388819-10389061
Length = 351
Score = 25.4 bits (53), Expect = 6.3
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +1
Query: 193 EENKELCYWPGHPANQRSI 249
+E ++L +WP HP + R +
Sbjct: 147 KEEQDLAFWPDHPESFRDV 165
>10_08_0902 -
21449748-21449993,21450136-21450460,21450658-21450905,
21451091-21451324
Length = 350
Score = 25.0 bits (52), Expect = 8.3
Identities = 7/17 (41%), Positives = 14/17 (82%)
Frame = +1
Query: 196 ENKELCYWPGHPANQRS 246
E+++L +WP HP++ R+
Sbjct: 146 ESRDLRFWPAHPSSFRN 162
>06_01_0548 +
3904487-3904711,3904805-3905064,3905284-3905608,
3905729-3905971
Length = 350
Score = 25.0 bits (52), Expect = 8.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +1
Query: 193 EENKELCYWPGHPANQRSI 249
+E + L +WP HP + R +
Sbjct: 146 KEERNLAFWPDHPESFRDV 164
>06_01_0545 +
3892664-3892888,3892914-3893173,3893393-3893717,
3893838-3893999,3894192-3894272
Length = 350
Score = 25.0 bits (52), Expect = 8.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +1
Query: 193 EENKELCYWPGHPANQRSI 249
+E + L +WP HP + R +
Sbjct: 146 KEERNLAFWPDHPESFRDV 164
>06_01_0535 +
3854608-3854832,3854926-3855185,3855405-3855729,
3855850-3856092
Length = 350
Score = 25.0 bits (52), Expect = 8.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +1
Query: 193 EENKELCYWPGHPANQRSI 249
+E + L +WP HP + R +
Sbjct: 146 KEERNLAFWPDHPESFRDV 164
>03_01_0359 -
2805094-2805175,2805256-2805347,2805443-2805517,
2805582-2805675,2805769-2805872,2806777-2806885,
2807397-2807609,2808170-2808289,2809060-2809115,
2809210-2809287,2809374-2809733
Length = 460
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 193 EENKELCYWPGHPAN 237
E N ++C W GHP N
Sbjct: 94 EINSKICLWRGHPWN 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,950,467
Number of Sequences: 37544
Number of extensions: 80146
Number of successful extensions: 193
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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