Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C05
         (264 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    40   2e-04
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    40   2e-04
AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    40   2e-04
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    40   2e-04
U88168-1|AAC24403.2|  376|Caenorhabditis elegans Hypothetical pr...    27   1.4  
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical...    26   3.2  
Z66521-11|CAA91398.2|  471|Caenorhabditis elegans Hypothetical p...    25   7.4  
AC006712-6|AAO21405.1|  765|Caenorhabditis elegans Temporarily a...    25   7.4  
AC006712-5|AAK39326.2|  851|Caenorhabditis elegans Temporarily a...    25   7.4  
AB031233-1|BAA92262.1|  605|Caenorhabditis elegans kinesin like ...    25   7.4  
U39849-10|AAA81054.3|  951|Caenorhabditis elegans Glutamate rece...    25   9.8  
AC024813-5|AAK27883.1|  255|Caenorhabditis elegans Hypothetical ...    25   9.8  
AC024813-4|AAK27882.1|  297|Caenorhabditis elegans Hypothetical ...    25   9.8  

>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 16/24 (66%), Positives = 21/24 (87%)
 Frame = +2

Query: 191 EKRTKNFAIGQDIQPTRDLSRFVR 262
           EKR +NF IGQDIQP +D++RFV+
Sbjct: 137 EKRARNFNIGQDIQPKKDVTRFVK 160


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 16/24 (66%), Positives = 21/24 (87%)
 Frame = +2

Query: 191 EKRTKNFAIGQDIQPTRDLSRFVR 262
           EKR +NF IGQDIQP +D++RFV+
Sbjct: 137 EKRARNFNIGQDIQPKKDVTRFVK 160


>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 16/24 (66%), Positives = 21/24 (87%)
 Frame = +2

Query: 191 EKRTKNFAIGQDIQPTRDLSRFVR 262
           EKR +NF IGQDIQP +D++RFV+
Sbjct: 34  EKRARNFNIGQDIQPKKDVTRFVK 57


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 16/24 (66%), Positives = 21/24 (87%)
 Frame = +2

Query: 191 EKRTKNFAIGQDIQPTRDLSRFVR 262
           EKR +NF IGQDIQP +D++RFV+
Sbjct: 34  EKRARNFNIGQDIQPKKDVTRFVK 57


>U88168-1|AAC24403.2|  376|Caenorhabditis elegans Hypothetical
           protein K11H12.9 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 180 PSIPRREQRTLLLARTSSQPEIYPVS 257
           P+  RRE R ++L R    P I P+S
Sbjct: 140 PATARREYRNIILCRLLPHPNILPIS 165


>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
           protein Y47G6A.17 protein.
          Length = 1736

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 177 KPSIPRREQR-TLLLARTSSQPEIYPV 254
           KPS+PRR +R  +LLA  + +PEI  +
Sbjct: 519 KPSLPRRIRRPDMLLATKTVKPEIQKI 545


>Z66521-11|CAA91398.2|  471|Caenorhabditis elegans Hypothetical
           protein W02B12.7 protein.
          Length = 471

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 261 RTKRDRSLVGWMSWPIAKFFVLFSE*RVYNLL 166
           ++KRD +++GW     A F  +++E  VY+LL
Sbjct: 253 QSKRDLAMIGWNYKFQASFIEVYNE-EVYDLL 283


>AC006712-6|AAO21405.1|  765|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 332, isoform b protein.
          Length = 765

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 117 REKSSGRSTCGEES*AQEDCKPSIPRREQRTLLLARTSSQPEIYP 251
           RE S  +S+   +  + ++ +PSIPR+  +    +R  +Q    P
Sbjct: 655 RESSESQSSSSSDDDSDDEDRPSIPRKSGQPPSTSREWNQSSAPP 699


>AC006712-5|AAK39326.2|  851|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 332, isoform a protein.
          Length = 851

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 117 REKSSGRSTCGEES*AQEDCKPSIPRREQRTLLLARTSSQPEIYP 251
           RE S  +S+   +  + ++ +PSIPR+  +    +R  +Q    P
Sbjct: 655 RESSESQSSSSSDDDSDDEDRPSIPRKSGQPPSTSREWNQSSAPP 699


>AB031233-1|BAA92262.1|  605|Caenorhabditis elegans kinesin like
           protein protein.
          Length = 605

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 261 RTKRDRSLVGWMSWPIAKFFVLFSE*RVYNLL 166
           ++KRD +++GW     A F  +++E  VY+LL
Sbjct: 387 QSKRDLAMIGWNYKFQASFIEVYNE-EVYDLL 417


>U39849-10|AAA81054.3|  951|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 4 protein.
          Length = 951

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 119 PIFFLGFFCTILNGF*LSDLTATNRYVTYSEHQNYRL 9
           P    G F  +L G  ++ L A   Y   S H+ +RL
Sbjct: 796 PQNIFGIFYVLLTGLIVAFLLACGEYCIESRHEAFRL 832


>AC024813-5|AAK27883.1|  255|Caenorhabditis elegans Hypothetical
           protein Y54F10AL.1b protein.
          Length = 255

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 237 VGWMSWPIAKFFVLFSE*RVYNLLGLNFLHHKWS 136
           +GW++  I +    +    ++ L GL  LH  W+
Sbjct: 119 LGWITQVIPRAVTYYLSTALFALFGLKMLHEGWT 152


>AC024813-4|AAK27882.1|  297|Caenorhabditis elegans Hypothetical
           protein Y54F10AL.1a protein.
          Length = 297

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 237 VGWMSWPIAKFFVLFSE*RVYNLLGLNFLHHKWS 136
           +GW++  I +    +    ++ L GL  LH  W+
Sbjct: 119 LGWITQVIPRAVTYYLSTALFALFGLKMLHEGWT 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,078,977
Number of Sequences: 27780
Number of extensions: 70057
Number of successful extensions: 158
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 12,740,198
effective HSP length: 66
effective length of database: 10,906,718
effective search space used: 229041078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)