Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_C03
(445 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 127 5e-30
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 125 2e-29
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 124 4e-29
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538... 30 0.73
01_01_0512 + 3735005-3735580 27 6.8
03_02_0926 + 12448032-12448231,12448727-12448815,12449956-124500... 27 9.0
02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797 27 9.0
02_03_0371 - 18267986-18268378 27 9.0
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 127 bits (306), Expect = 5e-30
Identities = 71/134 (52%), Positives = 86/134 (64%), Gaps = 1/134 (0%)
Frame = +1
Query: 46 MGID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRP 222
MGID + ++K +RT KS DV T + FN +ILRRLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60
Query: 223 PISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGE 402
P+SL RL R M+ +E IAV+VGTV++D R+Y VP M VAAL TE ARARI+ GGE
Sbjct: 61 PLSLRRLVRFMEG--KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGE 118
Query: 403 ILTCDQLALRAPTG 444
LT DQLALRAP G
Sbjct: 119 CLTFDQLALRAPLG 132
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 125 bits (301), Expect = 2e-29
Identities = 71/140 (50%), Positives = 89/140 (63%), Gaps = 7/140 (5%)
Frame = +1
Query: 46 MGID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRP 222
MGID + ++K +RT +S+DV T + FN +IL+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRP 60
Query: 223 PISLSRLARHM--KKPTREGL----IAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARI 384
P+S+ RL R M K P R + IAV+VGTV++D R+Y VP M VAAL TE ARARI
Sbjct: 61 PLSMRRLVRFMEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARI 120
Query: 385 LAAGGEILTCDQLALRAPTG 444
+ AGGE LT DQLALRAP G
Sbjct: 121 INAGGECLTFDQLALRAPLG 140
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 124 bits (298), Expect = 4e-29
Identities = 68/134 (50%), Positives = 86/134 (64%), Gaps = 1/134 (0%)
Frame = +1
Query: 46 MGID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRP 222
MGID + ++K +RT +S DV T + FN +IL+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRP 60
Query: 223 PISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGE 402
P+SL RLA+ M+ E IAV+VGTV++D R+ +PKM V AL TE ARARI+ AGGE
Sbjct: 61 PLSLRRLAKFMEGK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGE 119
Query: 403 ILTCDQLALRAPTG 444
LT DQLALRAP G
Sbjct: 120 CLTFDQLALRAPLG 133
>06_03_1313 -
29252335-29252446,29253430-29253671,29253770-29253848,
29254991-29255130,29255262-29255571,29255810-29255952,
29256106-29256306,29256453-29256581,29256921-29257199,
29258036-29259720,29261255-29261764,29261901-29262108,
29264347-29264458,29264594-29264763
Length = 1439
Score = 30.3 bits (65), Expect = 0.73
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 351 CGYCHFRNS--VKPHIIGDCANDYSDQTLACRLLHVACQTGQRNRRSVDTAHKQSP 190
C Y H R S V H +C N++ C HV C+ + RRS + AHKQ+P
Sbjct: 658 CSYRHCRESKMVSDHY-KNCINEH------C---HVCCKAKEMLRRSSELAHKQNP 703
>01_01_0512 + 3735005-3735580
Length = 191
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 198 VYEPYQPTSDFFVPFGTPHEEAYTRGFDRCSR 293
VYEP T F +G P A GF+RC R
Sbjct: 153 VYEPTSDTPSTFY-YGDPLPNAVWYGFNRCPR 183
>03_02_0926 +
12448032-12448231,12448727-12448815,12449956-12450096,
12450181-12450283,12450386-12450481,12450580-12450654,
12450754-12450823,12451028-12451111
Length = 285
Score = 26.6 bits (56), Expect = 9.0
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 262 PTREGLIAVVVGTVSN-DVRLYTVPKMTVAALHVTEKARARILAAGG 399
PT E + +V +SN D T+ KMTV + A R+L GG
Sbjct: 95 PT-ENICKIVKAIISNSDYLSMTMKKMTVIHISQVNAANERMLGGGG 140
>02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797
Length = 518
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 289 VVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTCDQLAL 429
++G++ DV ++ + VAA+ V + R + GG +L Q+A+
Sbjct: 329 ILGSIITDV--VSISSVAVAAVVVDRRGRRTLFMVGGAVLILCQVAM 373
>02_03_0371 - 18267986-18268378
Length = 130
Score = 26.6 bits (56), Expect = 9.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 49 GIDINHKHDRKVRRTEVKSQDV 114
G+++NH+ D ++R E +QDV
Sbjct: 45 GVEVNHRGDEEIRVPEGPNQDV 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,276,117
Number of Sequences: 37544
Number of extensions: 230925
Number of successful extensions: 558
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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