Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C03
         (445 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L11566-1|AAA16329.1|  188|Homo sapiens ribosomal protein L18 pro...   156   3e-38
BC009708-1|AAH09708.1|  188|Homo sapiens ribosomal protein L18 p...   156   3e-38
BC000374-1|AAH00374.1|  188|Homo sapiens ribosomal protein L18 p...   156   3e-38
AB061825-1|BAB79463.1|  188|Homo sapiens ribosomal protein L18 p...   156   3e-38
BC021743-1|AAH21743.1|  188|Homo sapiens ribosomal protein L18 p...   154   1e-37
DQ403032-1|ABD77165.1|  164|Homo sapiens ribosomal protein L18 p...   127   1e-29
BC033037-1|AAH33037.1|  461|Homo sapiens C9orf43 protein protein.      29   9.6  
BC026884-1|AAH26884.1|  461|Homo sapiens chromosome 9 open readi...    29   9.6  
AL137066-6|CAH70101.1|  461|Homo sapiens chromosome 9 open readi...    29   9.6  

>L11566-1|AAA16329.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score =  156 bits (379), Expect = 3e-38
 Identities = 77/133 (57%), Positives = 94/133 (70%)
 Frame = +1

Query: 46  MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 225
           MG+DI H  DRKVRR E KSQD+               TN+ FNQ++L+RLFMSR NRPP
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60

Query: 226 ISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEI 405
           +SLSR+ R MK P RE   AVVVGT+++DVR+  VPK+ V AL VT +AR+RIL AGG+I
Sbjct: 61  LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120

Query: 406 LTCDQLALRAPTG 444
           LT DQLAL +P G
Sbjct: 121 LTFDQLALDSPKG 133


>BC009708-1|AAH09708.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score =  156 bits (379), Expect = 3e-38
 Identities = 77/133 (57%), Positives = 94/133 (70%)
 Frame = +1

Query: 46  MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 225
           MG+DI H  DRKVRR E KSQD+               TN+ FNQ++L+RLFMSR NRPP
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60

Query: 226 ISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEI 405
           +SLSR+ R MK P RE   AVVVGT+++DVR+  VPK+ V AL VT +AR+RIL AGG+I
Sbjct: 61  LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120

Query: 406 LTCDQLALRAPTG 444
           LT DQLAL +P G
Sbjct: 121 LTFDQLALDSPKG 133


>BC000374-1|AAH00374.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score =  156 bits (379), Expect = 3e-38
 Identities = 77/133 (57%), Positives = 94/133 (70%)
 Frame = +1

Query: 46  MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 225
           MG+DI H  DRKVRR E KSQD+               TN+ FNQ++L+RLFMSR NRPP
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60

Query: 226 ISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEI 405
           +SLSR+ R MK P RE   AVVVGT+++DVR+  VPK+ V AL VT +AR+RIL AGG+I
Sbjct: 61  LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120

Query: 406 LTCDQLALRAPTG 444
           LT DQLAL +P G
Sbjct: 121 LTFDQLALDSPKG 133


>AB061825-1|BAB79463.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score =  156 bits (379), Expect = 3e-38
 Identities = 77/133 (57%), Positives = 94/133 (70%)
 Frame = +1

Query: 46  MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 225
           MG+DI H  DRKVRR E KSQD+               TN+ FNQ++L+RLFMSR NRPP
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60

Query: 226 ISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEI 405
           +SLSR+ R MK P RE   AVVVGT+++DVR+  VPK+ V AL VT +AR+RIL AGG+I
Sbjct: 61  LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120

Query: 406 LTCDQLALRAPTG 444
           LT DQLAL +P G
Sbjct: 121 LTFDQLALDSPKG 133


>BC021743-1|AAH21743.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score =  154 bits (374), Expect = 1e-37
 Identities = 76/133 (57%), Positives = 93/133 (69%)
 Frame = +1

Query: 46  MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 225
           MG+DI H  DRKVRR E KSQD+               TN+ FNQ++L+RLFMSR NRPP
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60

Query: 226 ISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEI 405
           + LSR+ R MK P RE   AVVVGT+++DVR+  VPK+ V AL VT +AR+RIL AGG+I
Sbjct: 61  LCLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120

Query: 406 LTCDQLALRAPTG 444
           LT DQLAL +P G
Sbjct: 121 LTFDQLALDSPKG 133


>DQ403032-1|ABD77165.1|  164|Homo sapiens ribosomal protein L18
           protein.
          Length = 164

 Score =  127 bits (307), Expect = 1e-29
 Identities = 61/95 (64%), Positives = 76/95 (80%)
 Frame = +1

Query: 160 TNAKFNQIILRRLFMSRINRPPISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKM 339
           TN+ FNQ++L+RLFMSR NRPP+SLSR+ R MK P RE   AVVVGT+++DVR+  VPK+
Sbjct: 16  TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKL 75

Query: 340 TVAALHVTEKARARILAAGGEILTCDQLALRAPTG 444
            V AL VT +AR+RIL AGG+ILT DQLAL +P G
Sbjct: 76  KVCALRVTSRARSRILRAGGKILTFDQLALDSPKG 110


>BC033037-1|AAH33037.1|  461|Homo sapiens C9orf43 protein protein.
          Length = 461

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 325 CKASHHWRLCQRLQRSNPRV*ASSCGVP 242
           C+    W   +R++R +PR+  SSC  P
Sbjct: 19  CQHPQCWATIRRIERGHPRILGSSCKTP 46


>BC026884-1|AAH26884.1|  461|Homo sapiens chromosome 9 open reading
           frame 43 protein.
          Length = 461

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 325 CKASHHWRLCQRLQRSNPRV*ASSCGVP 242
           C+    W   +R++R +PR+  SSC  P
Sbjct: 19  CQHPQCWATIRRIERGHPRILGSSCKTP 46


>AL137066-6|CAH70101.1|  461|Homo sapiens chromosome 9 open reading
           frame 43 protein.
          Length = 461

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 325 CKASHHWRLCQRLQRSNPRV*ASSCGVP 242
           C+    W   +R++R +PR+  SSC  P
Sbjct: 19  CQHPQCWATIRRIERGHPRILGSSCKTP 46


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,312,963
Number of Sequences: 237096
Number of extensions: 1273760
Number of successful extensions: 2259
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2259
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3659526016
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)