Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C01
         (56 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70767-1|CAA94808.1|   59|Homo sapiens ribosomal protein S4 prot...    28   6.3  
M58459-1|AAA63256.1|  263|Homo sapiens ribosomal protein S4Y iso...    28   6.3  
M58458-1|AAA63255.1|  263|Homo sapiens ribosomal protein S4X iso...    28   6.3  
CR456735-1|CAG33016.1|  263|Homo sapiens RPS4X protein.                28   6.3  
BC100905-1|AAI00906.1|  263|Homo sapiens ribosomal protein S4, Y...    28   6.3  
BC100904-1|AAI00905.1|  263|Homo sapiens RPS4X protein protein.        28   6.3  
BC100903-1|AAI00904.1|  263|Homo sapiens RPS4X protein protein.        28   6.3  
BC071662-1|AAH71662.1|  263|Homo sapiens ribosomal protein S4, X...    28   6.3  
BC010286-1|AAH10286.1|  263|Homo sapiens ribosomal protein S4, Y...    28   6.3  
BC000472-1|AAH00472.1|  263|Homo sapiens ribosomal protein S4, X...    28   6.3  
AK222594-1|BAD96314.1|  263|Homo sapiens ribosomal protein S4, Y...    28   6.3  
AK222479-1|BAD96199.1|  263|Homo sapiens ribosomal protein S4, X...    28   6.3  
AF497481-1|AAM18074.1|  263|Homo sapiens ribosomal protein S4 pr...    28   6.3  
AF041428-1|AAB96968.1|  263|Homo sapiens ribosomal protein s4 X ...    28   6.3  
AF041427-1|AAB96967.1|  263|Homo sapiens ribosomal protein s4 Y ...    28   6.3  

>Z70767-1|CAA94808.1|   59|Homo sapiens ribosomal protein S4
          protein.
          Length = 59

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 2  MARGPKKHLKR 34
          MARGPKKHLKR
Sbjct: 1  MARGPKKHLKR 11


>M58459-1|AAA63256.1|  263|Homo sapiens ribosomal protein S4Y
          isoform protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 2  MARGPKKHLKR 34
          MARGPKKHLKR
Sbjct: 1  MARGPKKHLKR 11


>M58458-1|AAA63255.1|  263|Homo sapiens ribosomal protein S4X
          isoform protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 2  MARGPKKHLKR 34
          MARGPKKHLKR
Sbjct: 1  MARGPKKHLKR 11


>CR456735-1|CAG33016.1|  263|Homo sapiens RPS4X protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 2  MARGPKKHLKR 34
          MARGPKKHLKR
Sbjct: 1  MARGPKKHLKR 11


>BC100905-1|AAI00906.1|  263|Homo sapiens ribosomal protein S4,
          Y-linked 1 protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 2  MARGPKKHLKR 34
          MARGPKKHLKR
Sbjct: 1  MARGPKKHLKR 11


>BC100904-1|AAI00905.1|  263|Homo sapiens RPS4X protein protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 2  MARGPKKHLKR 34
          MARGPKKHLKR
Sbjct: 1  MARGPKKHLKR 11


>BC100903-1|AAI00904.1|  263|Homo sapiens RPS4X protein protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 2  MARGPKKHLKR 34
          MARGPKKHLKR
Sbjct: 1  MARGPKKHLKR 11


>BC071662-1|AAH71662.1|  263|Homo sapiens ribosomal protein S4,
          X-linked protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 2  MARGPKKHLKR 34
          MARGPKKHLKR
Sbjct: 1  MARGPKKHLKR 11


>BC010286-1|AAH10286.1|  263|Homo sapiens ribosomal protein S4,
          Y-linked 1 protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 2  MARGPKKHLKR 34
          MARGPKKHLKR
Sbjct: 1  MARGPKKHLKR 11


>BC000472-1|AAH00472.1|  263|Homo sapiens ribosomal protein S4,
          X-linked protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 2  MARGPKKHLKR 34
          MARGPKKHLKR
Sbjct: 1  MARGPKKHLKR 11


>AK222594-1|BAD96314.1|  263|Homo sapiens ribosomal protein S4,
          Y-linked 1 Y isoform variant protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 2  MARGPKKHLKR 34
          MARGPKKHLKR
Sbjct: 1  MARGPKKHLKR 11


>AK222479-1|BAD96199.1|  263|Homo sapiens ribosomal protein S4,
          X-linked X isoform variant protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 2  MARGPKKHLKR 34
          MARGPKKHLKR
Sbjct: 1  MARGPKKHLKR 11


>AF497481-1|AAM18074.1|  263|Homo sapiens ribosomal protein S4
          protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 2  MARGPKKHLKR 34
          MARGPKKHLKR
Sbjct: 1  MARGPKKHLKR 11


>AF041428-1|AAB96968.1|  263|Homo sapiens ribosomal protein s4 X
          isoform protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 2  MARGPKKHLKR 34
          MARGPKKHLKR
Sbjct: 1  MARGPKKHLKR 11


>AF041427-1|AAB96967.1|  263|Homo sapiens ribosomal protein s4 Y
          isoform protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 2  MARGPKKHLKR 34
          MARGPKKHLKR
Sbjct: 1  MARGPKKHLKR 11


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.306    0.122    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,523,244
Number of Sequences: 237096
Number of extensions: 17310
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 76,859,062
effective HSP length: 0
effective length of database: 76,859,062
effective search space used: 1383463116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)