Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C01
         (56 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal prot...    28   2.1  
BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p pro...    28   2.1  
AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-P...    28   2.1  
AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-P...    28   2.1  

>D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal
          protein S4 protein.
          Length = 261

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 2  MARGPKKHLKR 34
          MARGPKKHLKR
Sbjct: 1  MARGPKKHLKR 11


>BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p
          protein.
          Length = 261

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 2  MARGPKKHLKR 34
          MARGPKKHLKR
Sbjct: 1  MARGPKKHLKR 11


>AE014296-2240|AAF49846.1|  261|Drosophila melanogaster
          CG11276-PB, isoform B protein.
          Length = 261

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 2  MARGPKKHLKR 34
          MARGPKKHLKR
Sbjct: 1  MARGPKKHLKR 11


>AE014296-2239|AAF49847.1|  261|Drosophila melanogaster
          CG11276-PA, isoform A protein.
          Length = 261

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 2  MARGPKKHLKR 34
          MARGPKKHLKR
Sbjct: 1  MARGPKKHLKR 11


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.306    0.122    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,590,002
Number of Sequences: 53049
Number of extensions: 4597
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 24,988,368
effective HSP length: 0
effective length of database: 24,988,368
effective search space used: 449790624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)