Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_B24
(401 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce... 137 7e-34
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 27 1.4
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 26 2.5
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 3.3
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 25 4.4
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 25 4.4
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 25 5.8
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 24 7.7
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha... 24 7.7
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 24 7.7
>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 137 bits (331), Expect = 7e-34
Identities = 63/92 (68%), Positives = 76/92 (82%)
Frame = +3
Query: 126 EGISQSALPYRRSVPTWVKLTADDIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTG 305
+GI+ SALPY RS P W K AD + EQI K KKG++PSQIGV LRDSHG+ QVRF+TG
Sbjct: 9 KGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGIPQVRFITG 68
Query: 306 KKILRIMKAMGLAPDLPEDLYYLIKKAVAMRK 401
+KI+RI+KA GLAP+LPEDLY LIKKAV++RK
Sbjct: 69 QKIMRILKANGLAPELPEDLYNLIKKAVSVRK 100
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 26.6 bits (56), Expect = 1.4
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 196 SSAVSFTQVGTLRRYGSADWDIPSRSCITYCGFLYIRLTTLCEFRSRI-HS 47
SS S +L+ YGS +++ P + Y Y ++ + FRSR+ HS
Sbjct: 487 SSVTSHYINSSLKIYGSNEFETPEMISMAYEDGAYSQIEDMRNFRSRLDHS 537
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 2.5
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +3
Query: 54 IRLRNSHSVVNRIYKKPQYVMHDLEGISQSALPYRR 161
+RL SHS + K+P H+++ ++ +P R
Sbjct: 168 VRLHRSHSTDSNSKKRPSSKCHEIKPLTTREIPLAR 203
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.4 bits (53), Expect = 3.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 117 HDLEGISQSALPYRRSVPTWVKLT 188
H + + Q PY+ S+PT V+ T
Sbjct: 721 HTIASVEQDVYPYKTSLPTIVEAT 744
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 25.0 bits (52), Expect = 4.4
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -2
Query: 244 EGVRPFLPSLKICSLISSAVSFTQ 173
+ +RP +PS +C LI + ++Q
Sbjct: 13 KNIRPLIPSFHVCLLIMFLILYSQ 36
>SPBC32H8.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.0 bits (52), Expect = 4.4
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +3
Query: 3 LKGTKAGLHGWRRSKLWIRLRNSHSVVNRIYKKPQYVMHDLEGISQSALPYRRSVPTWVK 182
+K + G H WRR+ W+ L+ +N Y P + + ++ A Y R T++
Sbjct: 52 VKASMLGFHNWRRT-YWLYLKKLRP-INDTYDAPFAI--GCKNVAYEASQYPRMNATFMV 107
Query: 183 L 185
L
Sbjct: 108 L 108
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 24.6 bits (51), Expect = 5.8
Identities = 12/54 (22%), Positives = 26/54 (48%)
Frame = -1
Query: 350 IRSKTHSFHDTQDLFTSNKSDLCNTMRVPEHDTDLGRSKTLFAKFEDLFLNIIS 189
++++ D+ ++ K+ L + + TDLG L F+DL + ++S
Sbjct: 162 VKARYKEISDSLVAVSAEKTQLSEKVEKMKRSTDLGAEAVLPLDFQDLRVALLS 215
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 24.2 bits (50), Expect = 7.7
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 211 SSNLAKRVLLLPKSVSCSGTLMVLHKSDLLLVKRSCVS*KLWVLLLIYRKICTT 372
SS K L +V+C T++ L+ D VK+ +S + L++ CT+
Sbjct: 58 SSKNVKFEQKLDLAVTCLDTIVSLYAVDNEEVKKDVISCSCTIYPLVFLHCCTS 111
>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
Caf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 24.2 bits (50), Expect = 7.7
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Frame = +3
Query: 168 PTWVKLTADDIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAP 347
P V ++DD Q + L QIG+ L D G A V T + L
Sbjct: 60 PLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACT----WQFNFTFNLQD 115
Query: 348 DL--PEDLYYLIKKAVAMRK 401
D+ PE + L K + +K
Sbjct: 116 DMYAPESIELLTKSGIDFKK 135
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 24.2 bits (50), Expect = 7.7
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +3
Query: 312 ILRIMKAMGLAPDLPEDLYYLIKKAVA 392
I R+ +++ + P+LP+D+ L+ K+ A
Sbjct: 469 IRRLRESISIIPNLPKDIQKLVIKSYA 495
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,779,453
Number of Sequences: 5004
Number of extensions: 36459
Number of successful extensions: 98
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -