Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_B24
         (401 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95...   132   1e-31
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009...   122   8e-29
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95...   116   9e-27
02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416     80   6e-16
11_06_0584 - 25220371-25222917                                         30   0.60 
07_03_0776 + 21417476-21417691,21417775-21417855,21417941-214183...    29   1.4  
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300...    27   4.2  
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116...    27   5.6  
09_04_0370 + 17017567-17018335,17018634-17018914,17019012-170192...    27   5.6  
05_05_0015 + 21530547-21531047                                         27   5.6  
07_03_1281 - 25439634-25439750,25439868-25440071,25440328-254404...    27   7.3  
04_04_0842 + 28616729-28617078,28617166-28617359,28617416-286175...    27   7.3  
09_02_0318 - 7191763-7191879,7192375-7192494,7192568-7192666,719...    26   9.7  
08_02_1211 - 25319143-25320150,25320793-25321363,25321544-25321947     26   9.7  
08_01_0601 - 5268520-5271112,5272448-5272950                           26   9.7  
07_01_1156 - 10873223-10873417,10873498-10873579,10874235-108743...    26   9.7  
02_04_0019 - 18951037-18951180,18951939-18952403                       26   9.7  
02_03_0215 + 16505994-16506542,16506803-16507894                       26   9.7  

>08_01_0119 -
           951492-951679,951780-951918,952023-952095,952196-952218
          Length = 140

 Score =  132 bits (318), Expect = 1e-31
 Identities = 60/92 (65%), Positives = 75/92 (81%)
 Frame = +3

Query: 126 EGISQSALPYRRSVPTWVKLTADDIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTG 305
           +GIS SA+PY+R+ P+WVK  A D++E I K  KKG  PSQIGV+LRD HG+  V+ VTG
Sbjct: 9   KGISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTG 68

Query: 306 KKILRIMKAMGLAPDLPEDLYYLIKKAVAMRK 401
            KILRI+KA GLAP++PEDLY+LIKKAVA+RK
Sbjct: 69  SKILRILKAHGLAPEIPEDLYFLIKKAVAIRK 100


>07_03_0978 +
           23099690-23100108,23100530-23100564,23100868-23100926,
           23101269-23101310,23102003-23102065,23102172-23102253,
           23102570-23102609,23102657-23102753
          Length = 278

 Score =  122 bits (295), Expect = 8e-29
 Identities = 55/92 (59%), Positives = 73/92 (79%)
 Frame = +3

Query: 126 EGISQSALPYRRSVPTWVKLTADDIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTG 305
           +G+S S LPYRR+ P WVK +A +++E I ++ KKG  PSQIG +LRD+H V   + VTG
Sbjct: 9   KGMSCSVLPYRRAAPAWVKTSASEVEEMIVRVAKKGQLPSQIGAILRDAHAVPLAQGVTG 68

Query: 306 KKILRIMKAMGLAPDLPEDLYYLIKKAVAMRK 401
            KILR++K+ GLAP++PEDLY+LIKKAVAMRK
Sbjct: 69  GKILRVLKSRGLAPEVPEDLYFLIKKAVAMRK 100


>08_01_0120 -
           957365-957552,957642-957780,957847-957970,958398-958486
          Length = 179

 Score =  116 bits (278), Expect = 9e-27
 Identities = 60/110 (54%), Positives = 76/110 (69%), Gaps = 17/110 (15%)
 Frame = +3

Query: 123 LEGISQSALPYRRSVPTWVKLTADDI-----------------KEQIFKLGKKGLTPSQI 251
           ++GIS SALPY+R+ P+W+K  A D+                 +E I K  KKG  PSQI
Sbjct: 30  MKGISSSALPYKRTPPSWLKTAASDVGAFSFLSLSRLALFHLVEEMIMKAAKKGQMPSQI 89

Query: 252 GVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRK 401
           GV+LRD HG+  V+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RK
Sbjct: 90  GVVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRK 139


>02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416
          Length = 218

 Score = 80.2 bits (189), Expect = 6e-16
 Identities = 38/69 (55%), Positives = 49/69 (71%)
 Frame = +3

Query: 195 DIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYL 374
           +++E I K  K G   SQIGV+LR  HG+  V+ +   KIL I+KA GLAP + EDLY+L
Sbjct: 89  EVEEMIMKAAKMGQMSSQIGVVLRHQHGIPLVKSIASSKILHILKAHGLAPKILEDLYFL 148

Query: 375 IKKAVAMRK 401
           IKKAVA+RK
Sbjct: 149 IKKAVAIRK 157


>11_06_0584 - 25220371-25222917
          Length = 848

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 133 IPSRSCITYCGFLYIRLTTLCEFRSRIHSLERR 35
           +PS  C  YC FL+  LTT  +   RIH L+ R
Sbjct: 102 VPS-VCKPYCSFLHRNLTTRDQLARRIHELKDR 133


>07_03_0776 +
           21417476-21417691,21417775-21417855,21417941-21418342,
           21418457-21418621,21418729-21419460,21419542-21419748
          Length = 600

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 367 YKSSGRSGARPIAFMIRRIFLPVTNLTCA 281
           Y   GR G RP+A M+ R    V N TCA
Sbjct: 400 YNVPGRDGYRPVARMLARHDGAVLNFTCA 428


>06_03_0742 +
           24027506-24027721,24028835-24029004,24029893-24030052,
           24030162-24030455,24031490-24031717,24031827-24032006,
           24032079-24032238,24032591-24032617,24033426-24033613,
           24034269-24034532,24035123-24035218,24035311-24035399,
           24035473-24035620,24035842-24036051,24036141-24036440,
           24037906-24038248,24038747-24038952,24039071-24039273,
           24040021-24040117,24040148-24040222,24040328-24040602,
           24041116-24041256,24041469-24042339,24042481-24042520,
           24042605-24043050
          Length = 1808

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 156 RRSVPTWVKLTADDIKEQIFKLGKKGLTPSQIGVMLRD 269
           RRS     +++ D IKE +   GKK L  +++  +L+D
Sbjct: 326 RRSTNETRRISDDTIKEMVASSGKKHLLTTEVESILKD 363


>12_01_0151 -
           1158834-1159703,1159917-1160092,1160144-1162097,
           1162360-1162620,1162729-1162916,1164127-1164166
          Length = 1162

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -1

Query: 392 GDSLLDQVVQIFR*IRSKTHSFHDTQDLFTSNKSDLCNTMRVPEHDTDLGRSKTLFAKF 216
           GD L   V++ +  +   T    + QDL    KS L    +  +HDTD  R K    K+
Sbjct: 40  GDKLAPLVIREYSSLMGVTKDLQELQDLVEEIKSGL----QSEKHDTDNDRDKYAVLKY 94


>09_04_0370 +
           17017567-17018335,17018634-17018914,17019012-17019204,
           17019635-17019798
          Length = 468

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
 Frame = +3

Query: 51  WIRLRNSHSV--------VNRIYKKPQYVMHDLEGISQSALPYRRSVPTWVKLTADDIKE 206
           WI LR  HS+          R+YK     + DLE +S   + +  +  + V   A D+K 
Sbjct: 238 WITLRGGHSLRRLSIAKSTGRVYKVDTGKLPDLEHLSLRGVQWSWAAVSSVLQCARDVKH 297

Query: 207 QIFKLGKKG 233
            + K+   G
Sbjct: 298 LVMKIEFSG 306


>05_05_0015 + 21530547-21531047
          Length = 166

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 9   GTKAGLHGWRRSKLW 53
           G++A L GWRR +LW
Sbjct: 128 GSRALLRGWRRGRLW 142


>07_03_1281 -
           25439634-25439750,25439868-25440071,25440328-25440402,
           25440477-25440631,25440704-25440824,25440946-25441020,
           25441216-25441353,25441617-25441727,25441883-25441987,
           25442061-25442139,25442488-25442549,25442634-25442699,
           25442812-25442907,25443353-25443403,25443629-25443709
          Length = 511

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +3

Query: 141 SALPYRRSVPTWVKLTADDIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTG-KKIL 317
           S +PY     T   L  D++K+Q+ +   KG+T   + V++   +   QV      KKI+
Sbjct: 216 SLVPYFLDEETGWGLEVDELKKQLEEAQSKGITVRAL-VVINPGNPTGQVLAEENQKKIV 274

Query: 318 RIMKAMGLAPDLPEDLY 368
              K  GL   L +++Y
Sbjct: 275 EFCKNEGLVL-LADEVY 290


>04_04_0842 +
           28616729-28617078,28617166-28617359,28617416-28617582,
           28617693-28617928,28618049-28618160
          Length = 352

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 235 RPFLPSLKICSLISSAVSFTQVGTLRRYGSADW 137
           R FL  L    L  + V      TLR+YG+ DW
Sbjct: 94  RSFLRRLSFQPLRENPVLGPSAATLRKYGALDW 126


>09_02_0318 -
           7191763-7191879,7192375-7192494,7192568-7192666,
           7192846-7192957,7193058-7193161,7193341-7193520,
           7193611-7193880,7194364-7194660,7195283-7195477
          Length = 497

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -1

Query: 182 FHPGRDTAAVRQRR 141
           F+PGRD AA R+RR
Sbjct: 21  FYPGRDLAAARRRR 34


>08_02_1211 - 25319143-25320150,25320793-25321363,25321544-25321947
          Length = 660

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 157 RYGSADWDIPSRSCITYCGFLYIRLTTLCEFRSRIHSLERR 35
           R+G+A WD  ++   + C    +   T C  R R+  L RR
Sbjct: 44  RHGTASWDAVAKEMQSRCPSAAVFTPTTCRLRFRV--LHRR 82


>08_01_0601 - 5268520-5271112,5272448-5272950
          Length = 1031

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 120 DLEGISQSALPYRRSVPTWVKLTADDIKEQIFKLG 224
           +LE +  ++ P+R+    W  LT  +I++ + K+G
Sbjct: 150 NLEKLPCASKPHRKKYTDWSSLTELEIEDNLVKIG 184


>07_01_1156 -
           10873223-10873417,10873498-10873579,10874235-10874336,
           10874456-10874553,10874692-10874778,10874869-10875317,
           10875414-10875744,10875766-10875884,10875935-10876124,
           10876319-10876657,10876735-10876875,10876958-10877440,
           10877703-10877901,10879447-10879643
          Length = 1003

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 211 SSNLAKRVLLLPKSVSCSGTLMVLHKSDLLLVKRSCVS 324
           SSN +  V +  K V CS  L    +SD+ L+K++C S
Sbjct: 72  SSNNSDFVHVEGKGVRCSPRLNKFKQSDIGLLKKTCSS 109


>02_04_0019 - 18951037-18951180,18951939-18952403
          Length = 202

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -2

Query: 304 PVTNLTCATP*ESLSMTPIWEGVRPF-LPSLKICSLISSAVSFTQVGTLRRYG 149
           PV  +  A     L+M+P W G RP  L S+   SL+ +   F     LR +G
Sbjct: 151 PVVKIAMAQGLAQLAMSPYWFGPRPIRLASMVQYSLLPN--PFATATALRAHG 201


>02_03_0215 + 16505994-16506542,16506803-16507894
          Length = 546

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 174 WVKLTADDIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAM 335
           + K+    I +++   G K   P  IG  L D H +  V  VTGK ILR ++ +
Sbjct: 284 YCKVLLPSILQELDMYGVKA--PKGIG-QLNDLHTLGVVNVVTGKVILRELEKL 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,294,142
Number of Sequences: 37544
Number of extensions: 267832
Number of successful extensions: 789
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)