Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_B24
         (401 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal prote...   139   8e-34
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot...    28   2.9  
AL032656-4|CAB60309.2|  407|Caenorhabditis elegans Hypothetical ...    27   3.8  
AF003130-11|AAM15579.1|  250|Caenorhabditis elegans Hypothetical...    27   5.0  
AF003130-9|AAP68939.1|  307|Caenorhabditis elegans Hypothetical ...    27   5.0  
Z48783-8|CAA88702.2|  308|Caenorhabditis elegans Hypothetical pr...    26   8.8  
Z48582-7|CAA88468.2|  308|Caenorhabditis elegans Hypothetical pr...    26   8.8  

>U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 13 protein.
          Length = 151

 Score =  139 bits (336), Expect = 8e-34
 Identities = 60/92 (65%), Positives = 82/92 (89%)
 Frame = +3

Query: 126 EGISQSALPYRRSVPTWVKLTADDIKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTG 305
           +G+++SA+PYRRSVP+W K+TA+++++QI K+ KKGL PSQIGV+LRDSHGV QVR + G
Sbjct: 9   KGMAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGVGQVRRLAG 68

Query: 306 KKILRIMKAMGLAPDLPEDLYYLIKKAVAMRK 401
            KI RI+K+ G+AP+LPEDLY+L+KKAVA+RK
Sbjct: 69  NKIFRILKSKGMAPELPEDLYHLVKKAVAIRK 100


>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
           3, isoform b protein.
          Length = 1178

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +1

Query: 97  KSRNMLCTTWKVYPSRRCRTAAVSLPG*N*PLMILRNRSSNLAKRVLLLPK 249
           K +N +C T   +PS    T +++LP    P +++  R         ++PK
Sbjct: 337 KKKNSICDTRATFPSETKETISITLPAAPTPKVLMNARQDLKKTPEKIIPK 387


>AL032656-4|CAB60309.2|  407|Caenorhabditis elegans Hypothetical
           protein Y106G6E.6 protein.
          Length = 407

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 81  VNRIYKKPQYVMHDLEGISQSALPYRRSVPTWVKLTADDIKEQIFKLG 224
           +N    K Q    DLE +    + + R    W  L AD +KE+  K+G
Sbjct: 203 INTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIG 250


>AF003130-11|AAM15579.1|  250|Caenorhabditis elegans Hypothetical
           protein F55A12.2b protein.
          Length = 250

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 247 WEGVRPFLPSLKICSLISSAVSF 179
           WEG +P  P + +C+ I   VSF
Sbjct: 163 WEGSKPARPVIAMCAAIQMIVSF 185


>AF003130-9|AAP68939.1|  307|Caenorhabditis elegans Hypothetical
           protein F55A12.2c protein.
          Length = 307

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 247 WEGVRPFLPSLKICSLISSAVSF 179
           WEG +P  P + +C+ I   VSF
Sbjct: 220 WEGSKPARPVIAMCAAIQMIVSF 242


>Z48783-8|CAA88702.2|  308|Caenorhabditis elegans Hypothetical
           protein F27E5.2 protein.
          Length = 308

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 198 IKEQIFKLGKKGLTPSQIGVMLRDSHG 278
           ++  I  + KKG+ P  I   L+ SHG
Sbjct: 34  VRHAIISMAKKGIKPCHISRQLKVSHG 60


>Z48582-7|CAA88468.2|  308|Caenorhabditis elegans Hypothetical
           protein F27E5.2 protein.
          Length = 308

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 198 IKEQIFKLGKKGLTPSQIGVMLRDSHG 278
           ++  I  + KKG+ P  I   L+ SHG
Sbjct: 34  VRHAIISMAKKGIKPCHISRQLKVSHG 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,893,700
Number of Sequences: 27780
Number of extensions: 205986
Number of successful extensions: 473
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)