Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_B24
         (401 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   0.75 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   3.0  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   3.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   4.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   6.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   6.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   9.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    20   9.2  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 0.75
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -1

Query: 266 PEHDTDLGRSKTLFAKFE-DLFLNIISG*FHPGRDTAAVRQRR 141
           P H +DL     L  KFE DL +N      HPG      R RR
Sbjct: 175 PRHASDLDNCNHLMTKFEPDLDMN------HPGFADKEYRARR 211


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
          protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 3  LKGTKAGLHGWRRSKLWIRLRNSHSVVNRI 92
          ++GT+A    W R   W+ L NS+  ++ +
Sbjct: 15 IQGTQA--QHWSRGNTWLSLDNSNMSMSSV 42


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
          protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 3  LKGTKAGLHGWRRSKLWIRLRNSHSVVNRI 92
          ++GT+A    W R   W+ L NS+  ++ +
Sbjct: 15 IQGTQA--QHWSRGNTWLSLDNSNMSMSSV 42


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 226 LPSLKICSLISSAVSFTQV 170
           +PS K+ ++ISS  SF ++
Sbjct: 822 VPSTKVLAMISSVKSFMEL 840


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 308 FTSNKSDLCNTMRVPEHDTDLGRSKTL 228
           F + KS    TM +P H   L + KT+
Sbjct: 125 FKNAKSVTFQTMTIPNHYLWLYKDKTI 151


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = -3

Query: 198 YHQRLVSPR*GHCGGTAAPTG 136
           Y     SP  GH G T  P G
Sbjct: 110 YRSASPSPGMGHMGHTPTPNG 130


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +3

Query: 12   TKAGLHGWRRSKLWIRLR 65
            T A +  W   + W RLR
Sbjct: 1184 TAAAILTWNEKRFWERLR 1201


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 125 GRYIPVGAAVPPQCPYLGETN 187
           GR++P G        YL +TN
Sbjct: 186 GRFVPEGFLTSCSFDYLTDTN 206


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,118
Number of Sequences: 438
Number of extensions: 2537
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)