Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_B23
(482 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 31 0.12
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 29 0.37
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 4.5
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 25 4.5
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 25 4.5
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 4.5
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 25 6.0
SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces p... 25 6.0
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr... 25 7.9
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 7.9
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 7.9
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 30.7 bits (66), Expect = 0.12
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 88 LNNKQFALALTPEEVLSLVSPQPSKKFYG-PW 180
LN +F + L ++++ + P+P K F+G PW
Sbjct: 267 LNRSKFDVVLVEDDLIYMKGPRPKKSFFGLPW 298
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 29.1 bits (62), Expect = 0.37
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Frame = +2
Query: 71 WNALGS*TTSNSPSL*RPKKS*VSS--VRNRLKSSMGLGNSSRTSSTTLARP---SKPTR 235
+N + S TS SPS + S VSS V RL+ S+ SR+ S +L P S TR
Sbjct: 285 FNVISSYETSASPSTVIDQSSQVSSIFVNKRLRKSVNNQAISRSDSLSLDTPKIDSLFTR 344
Query: 236 ASFNSILMCNTSLQRRS 286
AS + + RRS
Sbjct: 345 ASIKPLKPSQSPNSRRS 361
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.4 bits (53), Expect = 4.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 122 PKKS*VSSVRNRLKSSMGLGNSSRTSSTTLARPSKPTRASFNSIL 256
PKK N L S LG+ + S +++ + PT+++ N +L
Sbjct: 275 PKKESRKESSNSLYESYRLGSQIASPSPSVSGSASPTKSNKNGVL 319
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 55 PYLLEMERPRLLNNKQFALALTPEEVLSLVSPQPSKKFYG 174
P + P+L TP +VL +SP+ + KF G
Sbjct: 455 PSTVPKMNPKLQGGNSVTAPSTPSKVLPAMSPKVAPKFQG 494
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 25.4 bits (53), Expect = 4.5
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 333 FMISLNDDKSVNGFHGDLLWSEVLHIKIELKLALVGFDGRAR 208
F+ + + S N FHG L W L +K+ L L L G AR
Sbjct: 87 FLSTKSTSASENKFHGGLNW---LSLKLNLLLRLQGRMNSAR 125
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.4 bits (53), Expect = 4.5
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 308 LSSLRLIMKRRWMSTDGCLESFHGDTSCLKSVMSTL 415
LSS + ++K W D + TSC+ ++S+L
Sbjct: 554 LSSCKNLLKVLWDCLDDVKDDLSSSTSCVMDLLSSL 589
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.0 bits (52), Expect = 6.0
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +3
Query: 405 CRRCPVPAVFGRSVVNHSALGASSNC 482
C++ P P + G N GA +NC
Sbjct: 443 CKQLPQPRITGNDQENSHYTGAGNNC 468
>SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 25.0 bits (52), Expect = 6.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 121 PEEVLSLVSPQPSKKFY 171
P+ ++SL +P+P KFY
Sbjct: 183 PDTLISLTAPKPCSKFY 199
>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 24.6 bits (51), Expect = 7.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 154 PSKKFYGPWKQLSNLLHDS 210
PSK+ +GPW +S L D+
Sbjct: 51 PSKRLWGPWNFISFWLADA 69
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 24.6 bits (51), Expect = 7.9
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +1
Query: 94 NKQFALALTPEEVLSLV---SPQPSKKFYGP 177
NK+F LAL P+E+ LV + +PS K P
Sbjct: 178 NKKFGLALAPDEIDYLVECYTSEPSLKSREP 208
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 24.6 bits (51), Expect = 7.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 185 SSRTSSTTLARPSKPTRASFNSILMCNTSLQRRS 286
S+ ++T ++R SKPT + NSI NT+ + S
Sbjct: 337 STPAANTIISRSSKPTDTT-NSISFANTTPENTS 369
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,017,787
Number of Sequences: 5004
Number of extensions: 40040
Number of successful extensions: 151
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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