Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_B22
(372 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 188 2e-49
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 109 2e-25
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 89 2e-19
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 56 2e-09
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 54 1e-08
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 48 6e-07
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 46 3e-06
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 30 0.10
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 0.71
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.2
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 2.2
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 2.9
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 2.9
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 24 6.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 6.7
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 24 8.8
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 24 8.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 188 bits (458), Expect = 2e-49
Identities = 82/89 (92%), Positives = 86/89 (96%)
Frame = +2
Query: 104 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 283
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 284 RGILRLKYPIEHGIVTNWDDMEKIWHHTF 370
RGIL LKYPIEHGIV NWDDMEKIWHHTF
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTF 90
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 109 bits (261), Expect = 2e-25
Identities = 45/83 (54%), Positives = 62/83 (74%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILRL 301
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L++
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 302 KYPIEHGIVTNWDDMEKIWHHTF 370
+ PIE GI+ NW DME+IW + +
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIY 94
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 89.0 bits (211), Expect = 2e-19
Identities = 41/89 (46%), Positives = 63/89 (70%), Gaps = 2/89 (2%)
Frame = +2
Query: 110 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 283
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 284 RGILRLKYPIEHGIVTNWDDMEKIWHHTF 370
R +L++KYP+E+GI+ ++++M ++W +TF
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTF 90
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 55.6 bits (128), Expect = 2e-09
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 24/106 (22%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 250
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 251 ------DSYVGDEAQSKRGI-LRLKYPIEHGIVTNWDDMEKIWHHT 367
D ++G++A K L YPI HG + NWD ME+ W +
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQS 112
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 53.6 bits (123), Expect = 1e-08
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILRL 301
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G +
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSI 82
Query: 302 -KYPIEHGIVTNWDDMEKIWHHTF 370
+ P E +++NWD ME++ +TF
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTF 106
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 47.6 bits (108), Expect = 6e-07
Identities = 28/86 (32%), Positives = 45/86 (52%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 286
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 287 GILRLKYPIEHGIVTNWDDMEKIWHH 364
G + +K I +G V NWD +W +
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRY 86
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 45.6 bits (103), Expect = 3e-06
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 286
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 287 GI--LRLKYPIEHGIVTNWDDMEKIW 358
I + +K +GI+ +W+ W
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTW 87
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 30.3 bits (65), Expect = 0.10
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 167 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILRLKYP 310
G+ PRA F ++ P H G+++ M KD G+E S +G + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 0.71
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 264 PT*ESF*PM-PTMTPW*RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSSS 103
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 26.6 bits (56), Expect = 1.2
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = +2
Query: 134 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKRGILR 298
N +GM + R F S VG + VG Q+DSY+ D++ S+R R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSERSYRR 377
Query: 299 LK 304
++
Sbjct: 378 VR 379
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 2.2
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 308 PIEHGIVTNWDDMEKIWHHTF 370
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 25.4 bits (53), Expect = 2.9
Identities = 20/79 (25%), Positives = 35/79 (44%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILRL 301
+V+DNG+ KAGFAG P+ + R + G + +G + + D L+
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSK-DGNRLFLGNELANCNDFT-----TLQF 59
Query: 302 KYPIEHGIVTNWDDMEKIW 358
+ E G + +W +W
Sbjct: 60 RRAHEKGYLVHWSTETAVW 78
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.4 bits (53), Expect = 2.9
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +3
Query: 114 LPRWS*TMGPECAKPVSRETTLPAPYFPRSW 206
L W T P+C P +RET + SW
Sbjct: 481 LETWMKTTCPKCHGPATRETDTMDTFVDSSW 511
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 24.2 bits (50), Expect = 6.7
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 154 FAHSGPIVYDQRGNFLV 104
+ HS PI+YD+ G+ +V
Sbjct: 162 YTHSQPILYDRDGSLIV 178
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 6.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 210 RPTIEGNTARGASSPAKPALHIPDPLSTTNAATS 109
RP+ +G A G A P+ IP PL +N +S
Sbjct: 950 RPSNDGRKASGPRPAAPPS--IPPPLPVSNILSS 981
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 23.8 bits (49), Expect = 8.8
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 289 YPQTQIPHRTRHRHQLGRYG 348
Y + PH+ +H LG YG
Sbjct: 307 YGNPEHPHQRKHAFDLGEYG 326
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 23.8 bits (49), Expect = 8.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 336 QLVTMPCSMGYLSLRIPLLLCASSPT*ESF 247
+L+ MP S + R P L+C + T E+F
Sbjct: 501 KLLVMPISSFHCVQRFPDLVCVQTSTAETF 530
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,495,151
Number of Sequences: 5004
Number of extensions: 28740
Number of successful extensions: 88
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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