Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_B21
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   136   1e-33
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   126   2e-30
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   6.8  
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    24   9.0  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  136 bits (329), Expect = 1e-33
 Identities = 62/71 (87%), Positives = 69/71 (97%)
 Frame = +2

Query: 14  THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 193
           THPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELD+L+E+SYKDSTLIMQLLR
Sbjct: 168 THPIRLGLALNFSVFYYEILNSPDRACYLAKQAFDEAISELDSLSEESYKDSTLIMQLLR 227

Query: 194 DNLTLWTSDTQ 226
           DNLTLWTSD +
Sbjct: 228 DNLTLWTSDAE 238


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  126 bits (303), Expect = 2e-30
 Identities = 57/71 (80%), Positives = 66/71 (92%)
 Frame = +2

Query: 14  THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 193
           T P+RLGLALNFSVFYYEIL+SP+ AC LAKQ FD+AI+ELD+L+E+SYKDSTLIMQLLR
Sbjct: 167 TDPMRLGLALNFSVFYYEILDSPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLLR 226

Query: 194 DNLTLWTSDTQ 226
           DNLTLWTSD +
Sbjct: 227 DNLTLWTSDAE 237


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 59  YYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 199
           Y ++    D   QLA Q F     +++ L  +++  S  ++Q ++DN
Sbjct: 449 YDDLFPYMDNFIQLAVQLFYHISKKVNCLYVEAFSSSDAVLQRIQDN 495


>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 32  GLALNFSVFYYEI--LNSPDKACQLAKQAFDDAIAELDTLNEDSY 160
           G A N   F+  +  + S  KACQ + Q    A+ EL+   +D Y
Sbjct: 18  GFANNKDAFFQTLGGVQSIQKACQTSFQNPKQALLELNLRPKDKY 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,292,186
Number of Sequences: 5004
Number of extensions: 18452
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)