Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_B21
(442 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 144 4e-35
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 143 5e-35
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 143 6e-35
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 140 5e-34
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 139 1e-33
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 137 3e-33
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 125 2e-29
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 73 1e-13
08_01_0896 + 8830912-8830984,8831088-8832389,8832502-8832756,883... 27 6.7
07_03_0747 - 21184839-21184939,21185078-21185338,21185445-21186903 27 6.7
07_03_0258 - 15907667-15907909,15909015-15909081,15910218-15910237 27 6.7
01_07_0014 - 40455673-40455723,40455815-40455892,40455987-404560... 27 6.7
04_04_0483 - 25554531-25554605,25554681-25555644,25555722-255558... 27 8.8
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 144 bits (348), Expect = 4e-35
Identities = 67/76 (88%), Positives = 70/76 (92%)
Frame = +2
Query: 14 THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 193
THPIRLGLALNFSVFYYEILNSPD+AC LAKQAFDDAIAELDTL E+SYKDSTLIMQLLR
Sbjct: 172 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDDAIAELDTLGEESYKDSTLIMQLLR 231
Query: 194 DNLTLWTSDTQGDGDE 241
DNLTLWTSD DG +
Sbjct: 232 DNLTLWTSDNAEDGGD 247
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 143 bits (347), Expect = 5e-35
Identities = 69/80 (86%), Positives = 73/80 (91%), Gaps = 1/80 (1%)
Frame = +2
Query: 14 THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 193
THPIRLGLALNFSVFYYEILNSPDKAC LAKQAFD+AI+ELDTL E+SYKDSTLIMQLLR
Sbjct: 167 THPIRLGLALNFSVFYYEILNSPDKACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLR 226
Query: 194 DNLTLWTSD-TQGDGDEPAE 250
DNLTLWTSD T+ GDE E
Sbjct: 227 DNLTLWTSDLTEDGGDEVKE 246
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 143 bits (346), Expect = 6e-35
Identities = 66/76 (86%), Positives = 71/76 (93%)
Frame = +2
Query: 14 THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 193
THPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELDTL E+SYKDSTLIMQLLR
Sbjct: 177 THPIRLGLALNFSVFYYEILNSPDRACTLAKQAFDEAISELDTLGEESYKDSTLIMQLLR 236
Query: 194 DNLTLWTSDTQGDGDE 241
DNLTLWTSD Q DG +
Sbjct: 237 DNLTLWTSDMQDDGGD 252
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 140 bits (339), Expect = 5e-34
Identities = 64/76 (84%), Positives = 70/76 (92%)
Frame = +2
Query: 14 THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 193
THPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELD+L E+SYKDSTLIMQLLR
Sbjct: 150 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDSLGEESYKDSTLIMQLLR 209
Query: 194 DNLTLWTSDTQGDGDE 241
DNLTLWTSD DG +
Sbjct: 210 DNLTLWTSDANDDGGD 225
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 139 bits (336), Expect = 1e-33
Identities = 65/76 (85%), Positives = 70/76 (92%)
Frame = +2
Query: 14 THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 193
THPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELDTL+E+SYKDSTLIMQLLR
Sbjct: 173 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLR 232
Query: 194 DNLTLWTSDTQGDGDE 241
DNLTLWTSD D E
Sbjct: 233 DNLTLWTSDISEDTAE 248
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 137 bits (332), Expect = 3e-33
Identities = 63/69 (91%), Positives = 68/69 (98%)
Frame = +2
Query: 14 THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 193
THPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELDTL+E+SYKDSTLIMQLLR
Sbjct: 391 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLR 450
Query: 194 DNLTLWTSD 220
DNLTLWTSD
Sbjct: 451 DNLTLWTSD 459
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 125 bits (301), Expect = 2e-29
Identities = 59/82 (71%), Positives = 67/82 (81%)
Frame = +2
Query: 14 THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 193
T PIRLGLALN SVFY EI+NSPDKACQLAK AFD+A+AEL +L+E++YKDSTLIMQLLR
Sbjct: 157 TDPIRLGLALNISVFYCEIMNSPDKACQLAKNAFDEAVAELPSLSEENYKDSTLIMQLLR 216
Query: 194 DNLTLWTSDTQGDGDEPAEGGD 259
DNL LW SD D D+ E D
Sbjct: 217 DNLALWNSDMADDADDIRERTD 238
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 72.5 bits (170), Expect = 1e-13
Identities = 31/55 (56%), Positives = 44/55 (80%)
Frame = +2
Query: 65 EILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQG 229
EI+NSP++A Q+AKQA D+A AE+++ + YKDS L+MQLL++NL LWTS+ G
Sbjct: 163 EIMNSPERASQVAKQALDEATAEINSAGVEGYKDSMLMMQLLKENLALWTSELTG 217
>08_01_0896 +
8830912-8830984,8831088-8832389,8832502-8832756,
8832908-8833011
Length = 577
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 413 FLQATGRISGGCEGAGA 363
F Q TGR SG C+ AGA
Sbjct: 519 FYQTTGRASGSCDFAGA 535
>07_03_0747 - 21184839-21184939,21185078-21185338,21185445-21186903
Length = 606
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 413 FLQATGRISGGCEGAGA 363
F Q TGR SG C+ AGA
Sbjct: 549 FYQTTGRASGSCDFAGA 565
>07_03_0258 - 15907667-15907909,15909015-15909081,15910218-15910237
Length = 109
Score = 27.1 bits (57), Expect = 6.7
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 125 IAELDTLNEDSYKDSTLIMQL-LRDNLTLWTSDTQGDGDEPAEGGDN*CVAA 277
I +LD L + + I +L LR L W D GDGDE GG CV A
Sbjct: 8 IIQLDKLLVRTIDSTQAIFELKLRLGLGSWDGD--GDGDEKVSGG---CVEA 54
>01_07_0014 -
40455673-40455723,40455815-40455892,40455987-40456049,
40456250-40456390,40456851-40456949,40457403-40457477,
40457556-40457652,40457738-40457805,40458456-40458512,
40458613-40458671,40458798-40458921,40459208-40459264,
40459378-40459457,40459585-40459793,40459868-40459986
Length = 458
Score = 27.1 bits (57), Expect = 6.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 65 EILNSPDKACQLAKQAFDDAIAELDTLNEDSYKD 166
E+ + A LAK A DD EL LN D+Y +
Sbjct: 73 EVAQAKAAAKALAKGAVDDVADELKELNMDNYDE 106
>04_04_0483 -
25554531-25554605,25554681-25555644,25555722-25555847,
25556162-25556331,25556431-25556526
Length = 476
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 294 THAHLFSLVFYKKTSNIREGREPRPRALASAAD 392
+H LFSL YK N E P P++ +++ +
Sbjct: 246 SHESLFSLQMYKDQQNDNEVSSPAPKSSSTSVE 278
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,060,350
Number of Sequences: 37544
Number of extensions: 145715
Number of successful extensions: 478
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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