Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_B21
         (442 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical pr...   147   4e-36
Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical pr...   145   1e-35
U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein ...   145   1e-35
Z66564-5|CAC42300.2|  198|Caenorhabditis elegans Hypothetical pr...    69   2e-12
Z73910-3|CAA98135.1|  125|Caenorhabditis elegans Hypothetical pr...    56   1e-08

>Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical
           protein F52D10.3a protein.
          Length = 248

 Score =  147 bits (356), Expect = 4e-36
 Identities = 71/84 (84%), Positives = 75/84 (89%), Gaps = 2/84 (2%)
 Frame = +2

Query: 14  THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 193
           THPIRLGLALNFSVF+YEILN+PDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR
Sbjct: 165 THPIRLGLALNFSVFFYEILNAPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 224

Query: 194 DNLTLWTSDTQGDGDE--PAEGGD 259
           DNLTLWTSD   D  +    EGG+
Sbjct: 225 DNLTLWTSDAATDDTDANETEGGN 248


>Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical
           protein M117.2 protein.
          Length = 248

 Score =  145 bits (351), Expect = 1e-35
 Identities = 70/80 (87%), Positives = 73/80 (91%)
 Frame = +2

Query: 14  THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 193
           THPIRLGLALNFSVFYYEILN+P+ ACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR
Sbjct: 164 THPIRLGLALNFSVFYYEILNTPEHACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 223

Query: 194 DNLTLWTSDTQGDGDEPAEG 253
           DNLTLWTSD  G  D+  EG
Sbjct: 224 DNLTLWTSDV-GAEDQEQEG 242


>U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein
           protein.
          Length = 248

 Score =  145 bits (351), Expect = 1e-35
 Identities = 70/80 (87%), Positives = 73/80 (91%)
 Frame = +2

Query: 14  THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 193
           THPIRLGLALNFSVFYYEILN+P+ ACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR
Sbjct: 164 THPIRLGLALNFSVFYYEILNTPEHACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 223

Query: 194 DNLTLWTSDTQGDGDEPAEG 253
           DNLTLWTSD  G  D+  EG
Sbjct: 224 DNLTLWTSDV-GAEDQEQEG 242


>Z66564-5|CAC42300.2|  198|Caenorhabditis elegans Hypothetical
           protein F52D10.3b protein.
          Length = 198

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 30/32 (93%), Positives = 32/32 (100%)
 Frame = +2

Query: 14  THPIRLGLALNFSVFYYEILNSPDKACQLAKQ 109
           THPIRLGLALNFSVF+YEILN+PDKACQLAKQ
Sbjct: 165 THPIRLGLALNFSVFFYEILNAPDKACQLAKQ 196


>Z73910-3|CAA98135.1|  125|Caenorhabditis elegans Hypothetical
           protein M117.3 protein.
          Length = 125

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
 Frame = +2

Query: 14  THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNE--DSYKDSTLIMQL 187
           THPIRLGLALN S   +++LN P +A ++A+ A D A  EL+ +    DSY  S L    
Sbjct: 42  THPIRLGLALNASALNFDVLNLPKEANEIAQSALDSAHRELEKMKSSLDSYDISNLKRAR 101

Query: 188 LRDNLTLWTSDTQGDGDEPAEGGDN 262
              +L   T + + DG E  E  DN
Sbjct: 102 TLYDLLKSTHEQRVDGKE-GEEADN 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,400,704
Number of Sequences: 27780
Number of extensions: 111517
Number of successful extensions: 284
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)