Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_B19
(377 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po... 32 0.026
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 27 0.74
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 27 0.98
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 25 3.9
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 25 5.2
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 24 6.9
SPBC577.03c |||GCN5-related N-acetyltransferase |Schizosaccharom... 24 9.1
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 9.1
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 24 9.1
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 24 9.1
SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp... 24 9.1
>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 32.3 bits (70), Expect = 0.026
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 31 PTGKCMSEPPYATRTEMMARLGQTESQYGTR-SEVKSSCSDSQYGSRQESLDIRHEIRPA 207
P GK S P A+RT + T ++ T+ S+ KSS +S+ S Q+S + R P+
Sbjct: 168 PLGK--SYRPKASRTTSSQSVASTMTKSSTKTSKKKSSKKNSKSESNQDSSNDRSSTAPS 225
Query: 208 SAESS 222
+AES+
Sbjct: 226 TAESN 230
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 27.5 bits (58), Expect = 0.74
Identities = 16/43 (37%), Positives = 31/43 (72%)
Frame = +1
Query: 223 YVSKQEILSQKALLINKESAYSVRLEEKLGIIKQRNQAKKDKI 351
+V +Q++ QK L+ KE+ RLE++L I++RNQ++K+++
Sbjct: 90 WVLEQDLKIQKDLV--KET--HARLEQRLEEIRKRNQSRKNQM 128
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 27.1 bits (57), Expect = 0.98
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 172 ESLDIRHEIRPASAESSYVSKQEILSQKALLINKESAYSVRLEEKLGIIKQRNQ 333
E+L R E++ + K KA L + RL +++ I+KQRNQ
Sbjct: 492 EALSNHRVTRSEMEEATEILKNNSADLKAQLEKQPQELENRLLQEISILKQRNQ 545
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.0 bits (52), Expect = 3.9
Identities = 13/46 (28%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +1
Query: 241 ILSQKALLINKESAYSVRLEEKLGIIKQRNQAKKDKIYQTR-KETI 375
+LS+KA L + +++ L+++ + ++NQ + +Y+TR K+T+
Sbjct: 329 VLSEKAKLEDSKNSVLSFLKDENELFMKQNQLYRTILYETRNKKTL 374
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 24.6 bits (51), Expect = 5.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 268 NKESAYSVRLEEKLGIIKQRNQAKKDKI 351
N ++ S+ LE+KL KQ+ + KDK+
Sbjct: 362 NAKTELSLSLEKKLEAKKQKEKVYKDKL 389
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 24.2 bits (50), Expect = 6.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 82 MARLGQTESQYGTRSEVKSSCSDS 153
++R + +Y TR K+ CSDS
Sbjct: 126 VSRKSSLQEKYSTRFSYKAGCSDS 149
>SPBC577.03c |||GCN5-related N-acetyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 23.8 bits (49), Expect = 9.1
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +1
Query: 214 ESSYVSKQEILSQKALLINKESAYSVRLEEKLGIIKQRNQAKKDKI 351
ESS ++K + + + + + ++ S+RL +KLG + + A D +
Sbjct: 163 ESSGIAKNKQILKYRVKVGSQNKPSIRLFKKLGFSQVKYNAYFDHV 208
>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 314
Score = 23.8 bits (49), Expect = 9.1
Identities = 24/88 (27%), Positives = 38/88 (43%)
Frame = +1
Query: 109 QYGTRSEVKSSCSDSQYGSRQESLDIRHEIRPASAESSYVSKQEILSQKALLINKESAYS 288
Q+ T+ ++S S+ +G R S D S SS E +K+ K
Sbjct: 34 QFSTQPALRSEGSELIFGGR--SFD--------SLLSSIKETMEEKKKKSSSFEKRDKRR 83
Query: 289 VRLEEKLGIIKQRNQAKKDKIYQTRKET 372
V+L+EK + RN+ + TRK+T
Sbjct: 84 VQLKEKSPLRTPRNRTQIIDARSTRKDT 111
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 23.8 bits (49), Expect = 9.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 283 KRIPYLLKALFGIISLV 233
++ PYL KAL+GI+ L+
Sbjct: 673 EKYPYLHKALYGILMLL 689
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 23.8 bits (49), Expect = 9.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 157 TDYQNNWILLQIEFHIEIQSVLILPSFQFL 68
T YQN W LL +E++ +L S +L
Sbjct: 400 TYYQNQWFLLDDTTIVEVKESEVLNSQAYL 429
>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 23.8 bits (49), Expect = 9.1
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 325 RNQAKKDKIYQTRKE 369
RNQ KKD Y RKE
Sbjct: 107 RNQEKKDPYYYIRKE 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.308 0.123 0.329
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,397,833
Number of Sequences: 5004
Number of extensions: 23988
Number of successful extensions: 75
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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