Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_B19
(377 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0308 + 4188726-4190351 32 0.17
06_03_0206 - 17898551-17900056,17900439-17900564,17902420-17902881 30 0.69
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472... 29 1.6
06_03_0187 - 17669618-17669665,17669916-17670065,17672546-17673073 28 2.1
01_06_0380 - 28874699-28874732,28875077-28876116 28 2.1
05_06_0129 - 25856981-25857568,25857652-25858058,25858227-25858410 27 3.7
02_05_0882 + 32477306-32478189,32478735-32478819,32478930-324789... 27 3.7
03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316... 27 4.9
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199... 27 6.5
11_06_0656 + 25926192-25926289,25927530-25927659,25928248-259282... 26 8.6
02_05_0924 - 32749682-32750200,32750756-32750959,32751062-327511... 26 8.6
01_01_1207 - 9710830-9711291 26 8.6
>04_01_0308 + 4188726-4190351
Length = 541
Score = 31.9 bits (69), Expect = 0.17
Identities = 16/50 (32%), Positives = 30/50 (60%)
Frame = +1
Query: 124 SEVKSSCSDSQYGSRQESLDIRHEIRPASAESSYVSKQEILSQKALLINK 273
+E K+S S+++ ++ L++ E++ A+AES K+EI+ Q L K
Sbjct: 210 TEEKNSLSEAEIKCLKQILEVAMEVKEAAAESFDAEKEEIMKQSNNLKRK 259
>06_03_0206 - 17898551-17900056,17900439-17900564,17902420-17902881
Length = 697
Score = 29.9 bits (64), Expect = 0.69
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = +1
Query: 85 ARLGQTESQYGTRSEVKSSCSDSQYGSRQESLDIRHEIRPASAESSYVSKQEILSQKALL 264
+R GQ Q T V CS ++ +++ SLD HEI AS K L K L
Sbjct: 617 SRAGQFRDQCTTSGNVYDLCSPARQLNQRSSLD--HEITEASPTHPLEGKSTTLKAKLLQ 674
Query: 265 INKESAYS 288
E ++
Sbjct: 675 ARLEGQHA 682
>06_03_0092 + 16546204-16546693,16546958-16547028,16547145-16547221,
16547322-16547469,16550080-16550148,16550348-16550509,
16550625-16550785,16551240-16551324,16552068-16552144,
16552234-16552441,16555844-16555921,16556463-16556591,
16556665-16556808,16556893-16557038,16557137-16557293,
16557391-16557449,16557582-16557741,16557849-16557998,
16558093-16558229,16558325-16558471,16558556-16558657,
16558742-16558799,16558895-16558996,16559729-16559766,
16559868-16559994,16560075-16560245,16560334-16560465,
16560577-16560686,16560866-16560926,16561031-16561208,
16561293-16561498,16561590-16561709,16561903-16562001,
16562152-16562370,16562701-16562840,16563175-16563286,
16563375-16563425,16563509-16563589,16563683-16563853,
16563934-16564089,16564174-16564380,16565145-16565215,
16565315-16565414,16565783-16565839,16566156-16566212,
16566308-16566388,16566467-16566606,16566641-16566764
Length = 2041
Score = 28.7 bits (61), Expect = 1.6
Identities = 22/98 (22%), Positives = 47/98 (47%)
Frame = +1
Query: 55 PPYATRTEMMARLGQTESQYGTRSEVKSSCSDSQYGSRQESLDIRHEIRPASAESSYVSK 234
PP +TE++ + TE +EV+ + Q +Q + D+ E + + + + K
Sbjct: 1499 PPVVQQTEVLVQ--DTEKVDSLTAEVEELKTSLQ-SEKQRADDL--EKKRSEEQQANEEK 1553
Query: 235 QEILSQKALLINKESAYSVRLEEKLGIIKQRNQAKKDK 348
Q+ + + + + + Y RLEEKL ++ N+ + +
Sbjct: 1554 QKKMEETDVKMRQFQEYLRRLEEKLANVESENKVLRQQ 1591
>06_03_0187 - 17669618-17669665,17669916-17670065,17672546-17673073
Length = 241
Score = 28.3 bits (60), Expect = 2.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 25 LSPTGKCMSEPPYATRTEMM 84
LSPTGK ++PP+A R +M
Sbjct: 206 LSPTGKLYNQPPFAYRLPVM 225
>01_06_0380 - 28874699-28874732,28875077-28876116
Length = 357
Score = 28.3 bits (60), Expect = 2.1
Identities = 18/68 (26%), Positives = 38/68 (55%)
Frame = +1
Query: 136 SSCSDSQYGSRQESLDIRHEIRPASAESSYVSKQEILSQKALLINKESAYSVRLEEKLGI 315
+S SD++ + +E L+ ++ A + K++ +Q A + E A +RLEE++
Sbjct: 225 ASSSDAKVLALREELEDLQKLLQAEKDEFKADKRDS-NQLAGKVGSERAVKMRLEEEVIA 283
Query: 316 IKQRNQAK 339
+K+R +A+
Sbjct: 284 MKERARAR 291
>05_06_0129 - 25856981-25857568,25857652-25858058,25858227-25858410
Length = 392
Score = 27.5 bits (58), Expect = 3.7
Identities = 22/75 (29%), Positives = 35/75 (46%)
Frame = +1
Query: 19 GRLSPTGKCMSEPPYATRTEMMARLGQTESQYGTRSEVKSSCSDSQYGSRQESLDIRHEI 198
GR +PT +SEP ++R + + E+ SE S DS G ++ E
Sbjct: 8 GRRAPTPDPVSEPEESSREDYAQSDEEVEANVEGASEEASGDDDSGSGEDED------EG 61
Query: 199 RPASAESSYVSKQEI 243
R A AE ++S ++I
Sbjct: 62 RKAFAEHKWISWRDI 76
>02_05_0882 +
32477306-32478189,32478735-32478819,32478930-32478992,
32479177-32479334,32479460-32479535,32479622-32479681,
32479978-32480082,32480450-32480629
Length = 536
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 187 RHEIRPASAESSYVSKQEILSQKALLINKESAYSVRLEEKLGIIKQRNQAKKDKIYQTRK 366
R RPA++ S SK+ +L Q + +KE VRL+ K R + + + + + +
Sbjct: 182 RSYARPAASVRSVASKRALLKQDSADEDKEKGKLVRLD------KSREEIRGEVVVEATR 235
Query: 367 ET 372
ET
Sbjct: 236 ET 237
>03_06_0656 -
35330109-35331011,35331154-35331360,35331455-35331632,
35331726-35332221,35332889-35333033
Length = 642
Score = 27.1 bits (57), Expect = 4.9
Identities = 23/105 (21%), Positives = 45/105 (42%)
Frame = +1
Query: 58 PYATRTEMMARLGQTESQYGTRSEVKSSCSDSQYGSRQESLDIRHEIRPASAESSYVSKQ 237
P + E + Q S+ K ++ GS + L +H +S K
Sbjct: 205 PVSGPEESTGDVAQDNSKKDGGDPEKKKVRNTLSGSAKRKLKKKH-------DSKVSGKT 257
Query: 238 EILSQKALLINKESAYSVRLEEKLGIIKQRNQAKKDKIYQTRKET 372
E ++KA ++ +E + LEE +++++ +A +D + RK T
Sbjct: 258 EKEAEKAEVLKEEERKDMTLEEYEKVLEEKRKALEDSKSEGRKVT 302
>03_06_0353 -
33317015-33318235,33318567-33318824,33319587-33319904,
33319949-33320011,33320103-33320496,33320684-33320796,
33320932-33321639,33321667-33323199,33323395-33323607,
33323718-33324700,33324890-33325423,33325694-33325820,
33326083-33326162,33327347-33327377,33327949-33328053,
33328119-33328124,33328349-33328985,33329144-33329478,
33330394-33331113
Length = 2792
Score = 26.6 bits (56), Expect = 6.5
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +1
Query: 40 KCMSEPPYATRTEMMARLGQTESQYGTRSEVKSS--CSDSQYGSRQESLDIRHEIRPASA 213
K +S PY ++TE M RLG +S+ + + SS S+ G +E P S+
Sbjct: 460 KRVSSCPYPSKTEEMERLG-LKSETSKKPPLDSSKVKESSKKGYTREKRKSEENGSPTSS 518
Query: 214 ESSYVSKQEILSQK 255
KQ++ QK
Sbjct: 519 CKRPKKKQKVQMQK 532
>11_06_0656 +
25926192-25926289,25927530-25927659,25928248-25928294,
25929274-25929388,25929504-25929753,25930079-25930239,
25930372-25930567,25930672-25930836,25930918-25931070,
25931160-25931248,25931385-25931423,25931460-25931681,
25933503-25934165
Length = 775
Score = 26.2 bits (55), Expect = 8.6
Identities = 12/63 (19%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 37 GKCMSEPPYATRTEM-MARLGQTESQYGTRSEVKSSCSDSQYGSRQESLDIRHEIRPASA 213
G C +P + ++ + + +L + GTR ++ S+C+ G + R + +P ++
Sbjct: 321 GSCSMQPSHTSQGLLILQKLTEQLDVQGTRQQISSTCNGLSSGGLSVIVPNRSKFQPDTS 380
Query: 214 ESS 222
+ +
Sbjct: 381 DQN 383
>02_05_0924 - 32749682-32750200,32750756-32750959,32751062-32751109,
32751769-32751819,32751907-32752032,32752117-32752257,
32752750-32752971,32753160-32753312,32753536-32753718,
32753964-32754110,32754212-32754319,32754426-32754530,
32754824-32754928,32755243-32755310,32755498-32755576,
32755876-32755935,32756023-32756076,32756168-32756233,
32756701-32756753,32757042-32757096,32757645-32757787,
32758236-32758333,32758436-32758716
Length = 1022
Score = 26.2 bits (55), Expect = 8.6
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +1
Query: 73 TEMMARLGQTESQYGT-RSEVKSSCSDSQYGSRQESLDIRHEIRPASAESSYVSKQEILS 249
T++M + + S+ + RS + G+R++S+ RHE P ++ +++ L
Sbjct: 904 TKLMNQNEKLASELASVRSPTPRRANSGLRGTRRDSISRRHEPAPRRDNNAGYEREKAL- 962
Query: 250 QKALLINKESAYSVRLEEKLGIIKQR 327
+A+L+ KE L+ ++ KQ+
Sbjct: 963 -EAVLMEKEQK-EAELQRRIEESKQK 986
>01_01_1207 - 9710830-9711291
Length = 153
Score = 26.2 bits (55), Expect = 8.6
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -2
Query: 271 YLLKALFGIISLVSIHKTIPPMLVLFHVLCLMIL 170
+L+ L+G+I L + P ++L LC ++L
Sbjct: 26 FLVHGLYGLIELFGSPELSPEAMLLIFALCFLLL 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.308 0.123 0.329
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,393,333
Number of Sequences: 37544
Number of extensions: 137433
Number of successful extensions: 268
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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