Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_B19
(377 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81109-11|CAB03254.2| 318|Caenorhabditis elegans Hypothetical p... 30 0.48
Z77665-1|CAB01220.1| 339|Caenorhabditis elegans Hypothetical pr... 28 2.5
U13644-4|AAB52682.1| 412|Caenorhabditis elegans Hypothetical pr... 27 4.5
AF106579-8|AAC78201.1| 710|Caenorhabditis elegans Hypothetical ... 27 4.5
AF025470-4|AAB71054.1| 403|Caenorhabditis elegans Hypothetical ... 27 5.9
Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical p... 26 7.8
Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical pr... 26 7.8
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 26 7.8
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 26 7.8
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 26 7.8
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical... 26 7.8
AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical... 26 7.8
>Z81109-11|CAB03254.2| 318|Caenorhabditis elegans Hypothetical
protein R10D12.11 protein.
Length = 318
Score = 30.3 bits (65), Expect = 0.48
Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 235 VSIHKTIPPMLVLFHV--LCLMILDGYRTDYQNNWILLQIEFHIEIQSVLILPSFQ 74
+ + IP + +F + LC I+ GY N+ ++ H + ++++LP +Q
Sbjct: 237 ICVQVLIPFLFCIFPIGFLCFAIVSGYHVQVWNDMAVIMFGLHGTVATLVMLPLYQ 292
>Z77665-1|CAB01220.1| 339|Caenorhabditis elegans Hypothetical
protein K02E11.2 protein.
Length = 339
Score = 27.9 bits (59), Expect = 2.5
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Frame = -2
Query: 244 ISLVSIHKTIPPMLVLFHVLC--LMILDGYRTD----YQN----NWILLQIEFHIEIQSV 95
I + + K + ++LF+V C ++++D + D Y + N++ L I I
Sbjct: 222 IKMCKVLKKVQGSILLFNVGCSSILLMDSFEVDILITYASYVAFNFLALVYGITIPIIVH 281
Query: 94 LILPSFQFL*HKVAHSCISRSEIA 23
++LP +Q ++ H+C RS+ A
Sbjct: 282 VVLPEWQKESRRLIHTCFCRSKNA 305
>U13644-4|AAB52682.1| 412|Caenorhabditis elegans Hypothetical
protein F56D2.3 protein.
Length = 412
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 163 SRQESLDIRHEIRPASAESSYVSKQEILSQKALLINKESA 282
SR SL I H RP + +S + + + + ++ LLI+ SA
Sbjct: 98 SRSPSLTIVHSTRPCTVDSFFCTSRLLEMKRILLISLFSA 137
>AF106579-8|AAC78201.1| 710|Caenorhabditis elegans Hypothetical
protein F54E2.5 protein.
Length = 710
Score = 27.1 bits (57), Expect = 4.5
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -2
Query: 259 ALFGIISLVSIHKTIPPMLVLFHVLCLMILDGYRTDYQNNWILLQIEFHIEIQS 98
A + IISL + I +L + +M+L GY + W L Q+ + I S
Sbjct: 402 AFYFIISLFVLSTVITTLLTTVFTVLIMLLWGYFKPMKFFWFLAQLTISVFIIS 455
>AF025470-4|AAB71054.1| 403|Caenorhabditis elegans Hypothetical
protein W10D9.4 protein.
Length = 403
Score = 26.6 bits (56), Expect = 5.9
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Frame = +1
Query: 10 NYP-GRLSPTGKCMSEPPYATRTEMMARLGQTESQYGTRSEVKSSC---SDSQYGSRQES 177
N P GR P G EP + + +M ++GQ S Y + S D +Y +E
Sbjct: 312 NMPDGRAIPHGMGQEEPQPVSSSSVMRKIGQNPSSYAQQHHHVSHVEQHDDVEYEEEEEV 371
Query: 178 LDIRHEIRP 204
+ + P
Sbjct: 372 DQVEEDTVP 380
>Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical
protein F45E10.1b protein.
Length = 1549
Score = 26.2 bits (55), Expect = 7.8
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = +1
Query: 166 RQESLDIRHEIRPASAESSYVSKQEILSQKALLINKESAYSVRLEEKLGIIKQRNQAKKD 345
RQ SL+ R + + SS SKQE +S + NK+S +++ ++ ++ + KK+
Sbjct: 943 RQPSLESVASHRSSMSSSSKSSKQEKISLSSFGKNKKS-WALSVDSQIRSSLSKFTKKKN 1001
Query: 346 KIY 354
K Y
Sbjct: 1002 KNY 1004
>Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical protein
F45E10.1b protein.
Length = 1549
Score = 26.2 bits (55), Expect = 7.8
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = +1
Query: 166 RQESLDIRHEIRPASAESSYVSKQEILSQKALLINKESAYSVRLEEKLGIIKQRNQAKKD 345
RQ SL+ R + + SS SKQE +S + NK+S +++ ++ ++ + KK+
Sbjct: 943 RQPSLESVASHRSSMSSSSKSSKQEKISLSSFGKNKKS-WALSVDSQIRSSLSKFTKKKN 1001
Query: 346 KIY 354
K Y
Sbjct: 1002 KNY 1004
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 26.2 bits (55), Expect = 7.8
Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Frame = +1
Query: 28 SPTGKCMSEP--PYATRTEMMARLGQTESQYGTRSEVKSSCSDSQYGSRQESLDIRHEIR 201
S T K + E P + T+ +A + + + + ++++ + + + L+ +++
Sbjct: 9783 SVTSKTVVESGGPSESETQKVADAARKQKETDEKQKLEAEITAKKSADEKSKLEAESKLK 9842
Query: 202 PASAESSYVSKQEILSQKALLINKESAYSVRLEEKLGIIKQRNQAKKDKIYQTRKE 369
A AE KQ+ ++ L ++ E+A EKL + KQ K + +KE
Sbjct: 9843 KA-AEVEAAKKQKEKDEQ-LKLDTEAASKKAAAEKLELEKQAQIKKAAEADAVKKE 9896
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 26.2 bits (55), Expect = 7.8
Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Frame = +1
Query: 28 SPTGKCMSEP--PYATRTEMMARLGQTESQYGTRSEVKSSCSDSQYGSRQESLDIRHEIR 201
S T K + E P + T+ +A + + + + ++++ + + + L+ +++
Sbjct: 9803 SVTSKTVVESGGPSESETQKVADAARKQKETDEKQKLEAEITAKKSADEKSKLEAESKLK 9862
Query: 202 PASAESSYVSKQEILSQKALLINKESAYSVRLEEKLGIIKQRNQAKKDKIYQTRKE 369
A AE KQ+ ++ L ++ E+A EKL + KQ K + +KE
Sbjct: 9863 KA-AEVEAAKKQKEKDEQ-LKLDTEAASKKAAAEKLELEKQAQIKKAAEADAVKKE 9916
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 26.2 bits (55), Expect = 7.8
Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Frame = +1
Query: 28 SPTGKCMSEP--PYATRTEMMARLGQTESQYGTRSEVKSSCSDSQYGSRQESLDIRHEIR 201
S T K + E P + T+ +A + + + + ++++ + + + L+ +++
Sbjct: 9803 SVTSKTVVESGGPSESETQKVADAARKQKETDEKQKLEAEITAKKSADEKSKLEAESKLK 9862
Query: 202 PASAESSYVSKQEILSQKALLINKESAYSVRLEEKLGIIKQRNQAKKDKIYQTRKE 369
A AE KQ+ ++ L ++ E+A EKL + KQ K + +KE
Sbjct: 9863 KA-AEVEAAKKQKEKDEQ-LKLDTEAASKKAAAEKLELEKQAQIKKAAEADAVKKE 9916
>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
protein Y39B6A.30 protein.
Length = 1408
Score = 26.2 bits (55), Expect = 7.8
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +1
Query: 121 RSEVKSSCSDSQYGSRQESLDIRHEIRPASAESSYVSKQEILSQKALLINKESAYSVRL- 297
R++ K + + + +E + I E A + +++E ++A E A V+
Sbjct: 957 RNKEKVKAEEERLKAEEEKVKIEKEKVKAEEQKIKAAEEERRKERA-----EDAKKVKEG 1011
Query: 298 EEKLGIIKQRNQAKKDKIYQTRKE 369
+EK+ I+ + Q K+DK RK+
Sbjct: 1012 QEKIAILNAKVQEKEDKSEARRKQ 1035
>AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical
protein Y39B6A.18 protein.
Length = 1352
Score = 26.2 bits (55), Expect = 7.8
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +1
Query: 121 RSEVKSSCSDSQYGSRQESLDIRHEIRPASAESSYVSKQEILSQKALLINKESAYSVRL- 297
R++ K + + + +E + I E A + +++E ++A E A V+
Sbjct: 918 RNKEKVKAEEERLKAEEEKVKIEKEKVKAEEQKIKSAEEERRKERA-----EDAKKVKEG 972
Query: 298 EEKLGIIKQRNQAKKDKIYQTRKE 369
+EK+ ++ NQ +KD+ RK+
Sbjct: 973 QEKIAMLNAENQERKDRSEARRKQ 996
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.308 0.123 0.329
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,464,273
Number of Sequences: 27780
Number of extensions: 126800
Number of successful extensions: 356
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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