Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_B19
         (377 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   1.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   1.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   2.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   2.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   8.4  

>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 18/75 (24%), Positives = 30/75 (40%)
 Frame = +1

Query: 7   GNYPGRLSPTGKCMSEPPYATRTEMMARLGQTESQYGTRSEVKSSCSDSQYGSRQESLDI 186
           G Y  R+ P+G+  ++ P   R  +  R         T S++K   S  Q   R++ LD 
Sbjct: 41  GGYDARIRPSGENATDGPAIVRVNLFVR------SIATISDIKMEYS-VQLTFREQWLDE 93

Query: 187 RHEIRPASAESSYVS 231
           R           Y++
Sbjct: 94  RLRFNDFGGRLKYLT 108


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 34   TGKCMSEPPYATRTEMMARLGQTESQYGTRSEVKSSCSDS 153
            T  C S PP AT  + ++   + + +  T  +V+S  S+S
Sbjct: 1748 TEGCASPPPAATSMKSVSSRRRQQRKQQTPGDVESDESES 1787


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 34   TGKCMSEPPYATRTEMMARLGQTESQYGTRSEVKSSCSDS 153
            T  C S PP AT  + ++   + + +  T  +V+S  S+S
Sbjct: 1744 TEGCASPPPAATSMKSVSSRRRQQRKQQTPGDVESDESES 1783


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 7   GNYPGRLSPTGKCMSEPPYATRTEMMAR 90
           G Y  R+ P+G+  ++ P   R  +  R
Sbjct: 41  GGYDARIRPSGENATDGPAVVRVNIFVR 68


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 275 NPLIALG*KRNWELLSKGIKLK 340
           NPL+      +WE+ +KGI  K
Sbjct: 143 NPLLMQSGMGSWEVYTKGIGAK 164


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 10  NYPGRLSPTGKCMSEPPYATRTEMMARLG 96
           +Y G  +P G  + +P     TE+  +LG
Sbjct: 192 SYAGYKNPDGTIIGDPANIEFTELCMKLG 220


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 115 GTRSEVKSSCSDSQYGSRQESLD 183
           GTR+++     DSQY   Q   D
Sbjct: 674 GTRADICQLLKDSQYIREQTESD 696


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 67  TRTEMMARLGQTESQYGTRSEVKSSCSDSQYG 162
           T+     R+G  E+QY   +   SS  D   G
Sbjct: 107 TQITRKRRVGIVENQYAVENNTGSSLCDLVQG 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.308    0.123    0.329 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,371
Number of Sequences: 438
Number of extensions: 1683
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.8 bits)