Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_B18
         (356 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    98   4e-22
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    97   7e-22
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    28   0.37 
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    28   0.37 
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    26   2.0  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    25   2.6  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   2.6  
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch...    25   3.5  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    24   6.1  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    24   6.1  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        24   6.1  
SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce...    24   8.0  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 97.9 bits (233), Expect = 4e-22
 Identities = 48/78 (61%), Positives = 60/78 (76%), Gaps = 2/78 (2%)
 Frame = +1

Query: 121 QAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTE--GS 294
           QAERY+ M   MK V  T  EL+ EERNLLSVAYKNV+GARR+SWR++SSIEQK E  G+
Sbjct: 18  QAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGN 77

Query: 295 ERKQQMAKEYRVKVEKEL 348
             + ++ KEYR K+E+EL
Sbjct: 78  TAQVELIKEYRQKIEQEL 95


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 97.1 bits (231), Expect = 7e-22
 Identities = 48/80 (60%), Positives = 62/80 (77%), Gaps = 2/80 (2%)
 Frame = +1

Query: 121 QAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTE--GS 294
           QAERY++M   MK+V  +  +LS EERNLLSVAYKN++GARR+SWR+ISSIEQK E  G+
Sbjct: 17  QAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRASWRIISSIEQKEESRGN 76

Query: 295 ERKQQMAKEYRVKVEKELRE 354
            R+  + KEYR K+E EL +
Sbjct: 77  TRQAALIKEYRKKIEDELSD 96


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 28.3 bits (60), Expect = 0.37
 Identities = 19/98 (19%), Positives = 45/98 (45%)
 Frame = +1

Query: 46  VKSISSIVHDVRR*GGTSTTRQVG*QAERYDDMAAAMKEVTETGVELSNEERNLLSVAYK 225
           +  + S + D+ + GG+S ++ V  + ++        + +    +E   + + ++    K
Sbjct: 299 ISRLKSELRDLEKSGGSSNSKPVVVRPKK--------RNILTEELEKYKKSKKVVLGKRK 350

Query: 226 NVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVE 339
           N+     S+ R +SS + K   +E +  M  +Y  K+E
Sbjct: 351 NLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 28.3 bits (60), Expect = 0.37
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 166 TETGVELSNEERN-LLSVAYKNVVGARRSSWRVIS 267
           +ET  E+SN+E N LL + YK V     S+W   S
Sbjct: 34  SETDFEVSNDEDNQLLELGYKPVFKREFSTWATFS 68


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 211 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKE 345
           S +Y  + G   S W+ I  ++ K+ G +R    ++ Y    +KE
Sbjct: 61  SFSYPFLKGKSDSPWQAIQLLDFKSSGQQRAAYYSERYHSFRDKE 105


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +1

Query: 211 SVAYKNVVGARRSSWRVISSIEQKTEGSE---RKQQMAKEYRVKVEKELR 351
           SV+ +    +R  S+   S  E + E SE   R+Q++ +E R + EK+LR
Sbjct: 358 SVSSEERSRSRAGSFSHHSESENEDEDSEAFRRRQELRRERRRQAEKDLR 407


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 16/74 (21%), Positives = 31/74 (41%)
 Frame = +1

Query: 133  YDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQM 312
            Y+ MA  + E  E   ++ +    LLS  Y N        +R+ + +E+          +
Sbjct: 3025 YEKMALMVAEQEEFNAKIEDMALKLLSEKYDNEAYQAELFYRLSNCVEKVLHNKISITDL 3084

Query: 313  AKEYRVKVEKELRE 354
              EY   +E+ L++
Sbjct: 3085 KTEYEEILEQTLKK 3098


>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
           Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 200 ETFFPLLIKMWSAPDGHHGESFPLLNRKP 286
           E F P L++  +A D  +GE+  LL R+P
Sbjct: 104 EVFLPQLLRYPNASDPLNGEAAALLLREP 132


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 163 VTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAK 318
           + + GVE   +  N+L ++   V     SSWR       K E SE + + AK
Sbjct: 381 IQDDGVEQLMQPENILKISSDIVTQGSESSWRA------KAETSEMQLKEAK 426


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 153 DEGSDGNRRRAQQRRKKPSFRCL*KCGRRPTVIMAS 260
           DEG     ++ Q ++KKPS R   + GR+P+ + +S
Sbjct: 108 DEGKAIAPKKKQTKQKKPSVRG--RRGRKPSSLSSS 141


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +1

Query: 139 DMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVI 264
           D+A ++K   E   ++ +E   + SV +K++VG + ++   I
Sbjct: 631 DLAESVKSSAEASAKIVSEIIQVPSVYHKHIVGPKGTTLNAI 672


>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 214 VAYKNVVGARRSSWRVISSIEQKTEGSERKQQ 309
           + Y ++    +  +R++S+ EQ+ E  +RK Q
Sbjct: 142 IKYPDIEVNAKPRYRIMSAYEQRVEAPDRKFQ 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,427,369
Number of Sequences: 5004
Number of extensions: 25418
Number of successful extensions: 71
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)