Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_B18
         (356 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.1  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           20   7.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   7.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   7.6  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 239 PDGHHGESFPLLNRKPKGRKENNRWQKNIG 328
           P GHH  S PLL     G    +R + N G
Sbjct: 516 PSGHHASSAPLLAATLAGGLCPHRRRANSG 545


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 38  GHQ*NQYLPSSTMSVDKEELVQ 103
           GH  N +  S    V KEEL +
Sbjct: 24  GHDGNLWAKSEGFEVSKEELTK 45


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 345 LLFYFNPIFFCHLLFSFRPFGF 280
           L ++FN I  C L+ S    GF
Sbjct: 232 LYYFFNLIVPCVLIASMAVLGF 253


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 274 EQKTEGSERKQQMAKEYRVKVEKELRE 354
           E++T  +E+  +M K Y   ++KE ++
Sbjct: 441 EKRTIENEQLNRMYKSYPNYIDKETKD 467


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,659
Number of Sequences: 438
Number of extensions: 1795
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)