Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_B15
         (231 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   0.77 
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|...    25   1.3  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   1.8  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    24   2.3  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    24   2.3  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    24   3.1  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    23   4.1  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    23   5.4  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    23   5.4  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    23   5.4  
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    23   7.2  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    23   7.2  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    22   9.5  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    22   9.5  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    22   9.5  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    22   9.5  

>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 100 YVPVTICLRQPMLRLLNLHATAGHESLLTYSL 5
           Y     C+    LR L  H T GH  LL +SL
Sbjct: 21  YAKNRFCISIDHLRPLKSHRTHGHYCLLNFSL 52


>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -2

Query: 170 WMLS-WVHFEHFLENKXEHTDKTNLCACNNLPSAANVTSTKSPRDSRP*KPADIFP 6
           W L  W+     + N  E   KT L + N + +A +  +  SP D+    P D  P
Sbjct: 135 WKLPLWIGTPDSIPNTPELPVKTTLDSVNEIAAALSTHAESSPMDAT--SPVDSMP 188


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 86  NLPSAANVTSTKSPRDSRP*KPADI 12
           ++P+A   +ST S RD  P  P D+
Sbjct: 349 SIPAAEPASSTTSARDQTPSTPKDV 373


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 4/26 (15%)
 Frame = +3

Query: 108 FISMFTL----IFKKMFKMNPTQHPI 173
           ++S+F+L    + +K+F  N TQHP+
Sbjct: 30  YLSLFSLTNLFLIQKLFHANHTQHPL 55


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +2

Query: 80  ADCYRHIN*FYQYVHXY-FQENV 145
           A C+R+IN FY Y     F EN+
Sbjct: 141 AGCFRYINDFYIYTKSLDFNENL 163


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 104 NLCACNNLPSAANVTSTKSPRDSR 33
           N C+CN LPS  ++     P + +
Sbjct: 378 NYCSCNFLPSVLDLPMVNEPLEKQ 401


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 150 MNPTQHPIVFLKDVSHS 200
           ++ TQH +  LKDV HS
Sbjct: 154 LSSTQHQLTELKDVMHS 170


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 140 FLENKXEHTDKTNLCACNNLPSAAN 66
           F EN+ +H      C  NN PS +N
Sbjct: 201 FTENEPKHLSIRPNCKDNNTPSISN 225


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -2

Query: 155 VHFEHFLENKXEHTDKTNLCACNNLPSAAN 66
           V F  +L++    TD+ N+  CN +    N
Sbjct: 658 VRFRLYLDSSKALTDRLNVLLCNYIADKPN 687


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 1   ARGNMSAGFHGLLSRGDLVDVTLAAEGR 84
           A+G +  G H +L  G++ +  L  E R
Sbjct: 98  AKGGLKVGIHPVLLDGNIQNTILTPENR 125


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 194 TNIF*KYYWMLSWVHFE 144
           T++  K YW  S VHF+
Sbjct: 128 TSLMVKMYWRFSSVHFQ 144


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 80  PSAANVTSTKSPRDSRP*KPADIFPR 3
           PS  ++ ST  P D  P    D FPR
Sbjct: 363 PSHLSIPSTLPPADGVPKPTPDGFPR 388


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 94  PVTICLRQPMLRLLNLHATAGHESLLTYSL 5
           P+T  + Q       L+ T  HES+ TY L
Sbjct: 11  PLTNSISQSASAHPELYHTTSHESVSTYQL 40


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 13/20 (65%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -2

Query: 86  NLPSAA-NVTSTKSPRDSRP 30
           NL SAA NVT   S  DSRP
Sbjct: 308 NLASAATNVTGYVSETDSRP 327


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -3

Query: 85   ICLRQPMLRLLNLHATAGHESLLTYSL 5
            +C +QP+  +LN  +  GH   +  S+
Sbjct: 1076 LCHKQPIEEILNYASNFGHYKAIVQSV 1102


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 89  NNLPSAANVTSTKSPRD 39
           + LPS A+ T  +SP D
Sbjct: 157 SELPSGASTTQNRSPND 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 860,933
Number of Sequences: 5004
Number of extensions: 12829
Number of successful extensions: 43
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)