Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_B15
         (231 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067219-16|AAC17022.1|  531|Caenorhabditis elegans Hypothetical...    33   0.027
Z81086-1|CAB03120.2|  258|Caenorhabditis elegans Hypothetical pr...    26   4.1  
U41559-4|AAC24257.1|  413|Caenorhabditis elegans Hypothetical pr...    25   5.5  
AL132865-13|CAB60609.1|  496|Caenorhabditis elegans Hypothetical...    25   9.5  

>AF067219-16|AAC17022.1|  531|Caenorhabditis elegans Hypothetical
           protein R12E2.1 protein.
          Length = 531

 Score = 33.1 bits (72), Expect = 0.027
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +1

Query: 31  GLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSXLF 132
           GL +R  L DVTL    + + AH++VLS CS  F
Sbjct: 48  GLKNRDVLCDVTLICGWKRINAHRVVLSACSPYF 81


>Z81086-1|CAB03120.2|  258|Caenorhabditis elegans Hypothetical
           protein F53B6.1 protein.
          Length = 258

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 46  GDLVDVTLAAEGRLLQAHKLVLSVCSXLFSRKC 144
           G L D    A GRL++   +V ++ S LFS  C
Sbjct: 2   GALGDSAYGARGRLIKFSYIVTALISILFSISC 34


>U41559-4|AAC24257.1|  413|Caenorhabditis elegans Hypothetical
           protein C26B2.1 protein.
          Length = 413

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 110 KTNLCA-CNNLPSAANVTSTKSPRDS 36
           K + CA CN+ P  ANV S ++  D+
Sbjct: 64  KKHKCASCNDCPKCANVLSARTENDN 89


>AL132865-13|CAB60609.1|  496|Caenorhabditis elegans Hypothetical
           protein Y62E10A.16 protein.
          Length = 496

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 25  FHGLLSRGDLVDVTLAAEGRLLQAHKLVL 111
           +  L  +G+  D+ LAA GR  + HKL L
Sbjct: 60  YQKLFLQGENSDIVLAACGREWRVHKLYL 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,715,570
Number of Sequences: 27780
Number of extensions: 71896
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 12,740,198
effective HSP length: 56
effective length of database: 11,184,518
effective search space used: 223690360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)