Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_B15
         (231 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          46   8e-08
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      45   1e-07
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      23   0.49 
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               20   3.5  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 45.6 bits (103), Expect = 8e-08
 Identities = 22/45 (48%), Positives = 28/45 (62%)
 Frame = +1

Query: 4   RGNMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSXLFSR 138
           + NM++ FH LL     VDVTLA     L+AHK+VLS CS  F +
Sbjct: 19  QSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQK 63



 Score = 29.9 bits (64), Expect = 0.004
 Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 111 ISMFTLIFKKMFKMNPTQHP-IVFLKDVSHSALRDLLQFMY 230
           +S  +  F+K+   NP +HP I+  +DV  + L+ +++F+Y
Sbjct: 54  LSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVY 94


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 44.8 bits (101), Expect = 1e-07
 Identities = 20/43 (46%), Positives = 29/43 (67%)
 Frame = +1

Query: 4   RGNMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSXLF 132
           + ++++ F  L    D VDVTLA +GR L+AH++VLS CS  F
Sbjct: 15  QSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYF 57



 Score = 37.1 bits (82), Expect = 3e-05
 Identities = 13/33 (39%), Positives = 24/33 (72%)
 Frame = +3

Query: 132 FKKMFKMNPTQHPIVFLKDVSHSALRDLLQFMY 230
           F+++ K  P +HP++ L+DV+ S L  L++F+Y
Sbjct: 57  FRELLKSTPCKHPVIVLQDVAFSDLHALVEFIY 89


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 23.0 bits (47), Expect = 0.49
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 4  RGNMSAGFHGLLSRGDLVDVTLAAE 78
          + ++++ F  L    D VDVTLA E
Sbjct: 15 QSSITSAFENLRDDEDFVDVTLACE 39


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 20.2 bits (40), Expect = 3.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 137 ENVQNEPNSASNSIFKRC*SFSVKRLITVYV 229
           +N +NE    +   F RC    VK  IT Y+
Sbjct: 103 DNAKNEDKCLTAQKFSRCVIDYVKFHITQYM 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,032
Number of Sequences: 438
Number of extensions: 872
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3785850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)